Wall clock time and date at job start Mon Mar 30 2020 02:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.54150 * 109.06422 * 295.99158 * 10 9 7 12 12 O 1.40145 * 108.56663 * 161.60991 * 11 10 9 13 13 C 1.44607 * 117.04760 * 93.08790 * 12 11 10 14 14 C 1.54058 * 111.99190 * 318.64195 * 13 12 11 15 15 O 1.40097 * 112.65236 * 318.95458 * 14 13 12 16 16 C 1.44202 * 113.23157 * 93.03712 * 15 14 13 17 17 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 18 18 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 19 19 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 20 20 H 1.09006 * 109.05460 * 54.99868 * 10 9 7 21 21 H 1.09002 * 109.62079 * 281.41498 * 11 10 9 22 22 H 1.09004 * 109.61823 * 41.94986 * 11 10 9 23 23 H 1.08998 * 108.98066 * 197.98859 * 13 12 11 24 24 H 1.09000 * 108.90676 * 79.23874 * 13 12 11 25 25 H 1.08998 * 108.84857 * 198.13228 * 14 13 12 26 26 H 1.09002 * 108.76190 * 79.70851 * 14 13 12 27 27 H 1.09004 * 109.05673 * 159.63288 * 16 15 14 28 28 H 1.08994 * 109.00555 * 40.67745 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 6 3.0527 -3.6270 -1.3248 12 8 4.2120 -4.3962 -1.1562 13 6 4.1447 -5.7838 -1.5578 14 6 2.8126 -6.4394 -1.1466 15 8 2.3972 -6.0588 0.1361 16 6 1.5088 -4.9230 0.1326 17 1 -0.4849 0.8401 0.0041 18 1 0.6280 -2.5591 0.8866 19 1 0.6206 -2.5548 -0.8933 20 1 2.9288 -3.5505 0.8295 21 1 2.4522 -4.0405 -2.1351 22 1 3.3277 -2.5983 -1.5579 23 1 4.9662 -6.3279 -1.0920 24 1 4.2495 -5.8434 -2.6411 25 1 2.9308 -7.5227 -1.1716 26 1 2.0444 -6.1529 -1.8649 27 1 0.9516 -4.9041 1.0693 28 1 0.8080 -5.0230 -0.6961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260121942.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:11 Heat of formation + Delta-G solvation = -102.370872 kcal Electronic energy + Delta-G solvation = -11867.064313 eV Core-core repulsion = 9689.950167 eV Total energy + Delta-G solvation = -2177.114146 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.42253 -36.12779 -34.57852 -32.12260 -29.24314 -26.75365 -25.90585 -22.73915 -21.69423 -19.65513 -17.05368 -16.38227 -16.03430 -15.21815 -14.76785 -14.36986 -14.10004 -13.27187 -13.05652 -12.39627 -12.13468 -11.31321 -11.23205 -10.89803 -10.71021 -10.53997 -10.13274 -10.01881 -9.70737 -9.37555 -8.93456 -8.72341 -8.36492 -6.03577 -4.05671 3.31510 3.38076 3.42709 4.06903 4.36089 4.45481 5.05590 5.20447 5.32326 5.45887 5.55976 5.61833 5.71797 5.90212 6.05208 6.18522 6.29317 6.58846 6.90372 7.00737 7.53133 7.58739 7.70027 7.89495 7.96507 8.37658 9.00524 9.58835 11.07701 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.067592 B = 0.010482 C = 0.009456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.148777 B = 2670.526325 C = 2960.444831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.148 4.148 11 C 0.076 3.924 12 O -0.387 6.387 13 C 0.033 3.967 14 C 0.031 3.969 15 O -0.376 6.376 16 C 0.067 3.933 17 H 0.261 0.739 18 H 0.020 0.980 19 H 0.017 0.983 20 H 0.076 0.924 21 H 0.035 0.965 22 H 0.106 0.894 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -9.624 -3.344 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.167 4.167 11 C -0.001 4.001 12 O -0.306 6.306 13 C -0.044 4.044 14 C -0.048 4.048 15 O -0.294 6.294 16 C -0.009 4.009 17 H 0.070 0.930 18 H 0.039 0.961 19 H 0.035 0.965 20 H 0.095 0.905 21 H 0.053 0.947 22 H 0.124 0.876 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.027 -9.522 -3.100 10.794 hybrid contribution 0.015 0.983 -0.388 1.057 sum 4.042 -8.540 -3.487 10.071 Atomic orbital electron populations 1.69964 1.06091 1.26697 1.50761 1.25029 0.94836 0.99320 0.95221 0.86585 0.79945 0.83353 0.78126 1.20651 1.21247 1.19743 1.21245 0.93194 0.90696 1.50626 0.92213 1.19051 0.93310 0.90862 0.97476 1.21496 0.99819 0.96149 0.99213 1.22552 0.85872 0.96055 0.95590 1.87484 1.36997 1.19939 1.86179 1.23676 0.98663 0.83652 0.98379 1.22830 0.96019 0.99400 0.86525 1.87690 1.66349 1.48839 1.26544 1.21965 0.91078 0.85571 1.02265 0.92965 0.96121 0.96476 0.90544 0.94662 0.87605 0.89642 0.93021 0.89757 0.93320 0.89282 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.52 -14.44 8.13 -34.44 -0.28 -14.72 15 8 H 0.06 1.64 7.15 -52.49 -0.38 1.26 15 9 C 0.03 0.76 4.38 -27.89 -0.12 0.64 15 10 C -0.15 -3.15 2.10 -93.02 -0.20 -3.35 15 11 C 0.08 1.52 5.67 37.76 0.21 1.73 15 12 O -0.39 -7.45 10.29 -46.27 -0.48 -7.92 15 13 C 0.03 0.49 7.14 37.71 0.27 0.76 15 14 C 0.03 0.44 6.12 37.71 0.23 0.67 15 15 O -0.38 -6.67 10.50 -46.15 -0.48 -7.15 15 16 C 0.07 1.23 5.39 34.16 0.18 1.41 15 17 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 18 H 0.02 0.55 8.12 -51.93 -0.42 0.13 15 19 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 20 H 0.08 1.76 8.14 -51.93 -0.42 1.34 15 21 H 0.04 0.64 7.06 -51.93 -0.37 0.28 15 22 H 0.11 2.30 6.57 -51.93 -0.34 1.95 15 23 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 26 H 0.05 0.67 6.74 -51.93 -0.35 0.32 15 27 H 0.09 1.59 8.13 -51.93 -0.42 1.17 15 28 H 0.05 0.80 7.48 -51.93 -0.39 0.41 15 LS Contribution 229.57 15.07 3.46 3.46 Total: -1.00 -30.28 229.57 -5.50 -35.77 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.91 Total: -3.56 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 0.20 Total: -11.34 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.96 Total: -15.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.28 -5.50 -35.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121942.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.597 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds