Wall clock time and date at job start Mon Mar 30 2020 02:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.54150 * 109.06422 * 295.99158 * 10 9 7 12 12 O 1.40145 * 108.56663 * 161.60991 * 11 10 9 13 13 C 1.44607 * 117.04760 * 93.08790 * 12 11 10 14 14 C 1.54058 * 111.99190 * 318.64195 * 13 12 11 15 15 O 1.40097 * 112.65236 * 318.95458 * 14 13 12 16 16 C 1.44202 * 113.23157 * 93.03712 * 15 14 13 17 17 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 18 18 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 19 19 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 20 20 H 1.09006 * 109.05460 * 54.99868 * 10 9 7 21 21 H 1.09002 * 109.62079 * 281.41498 * 11 10 9 22 22 H 1.09004 * 109.61823 * 41.94986 * 11 10 9 23 23 H 1.08998 * 108.98066 * 197.98859 * 13 12 11 24 24 H 1.09000 * 108.90676 * 79.23874 * 13 12 11 25 25 H 1.08998 * 108.84857 * 198.13228 * 14 13 12 26 26 H 1.09002 * 108.76190 * 79.70851 * 14 13 12 27 27 H 1.09004 * 109.05673 * 159.63288 * 16 15 14 28 28 H 1.08994 * 109.00555 * 40.67745 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 6 3.0527 -3.6270 -1.3248 12 8 4.2120 -4.3962 -1.1562 13 6 4.1447 -5.7838 -1.5578 14 6 2.8126 -6.4394 -1.1466 15 8 2.3972 -6.0588 0.1361 16 6 1.5088 -4.9230 0.1326 17 1 -0.4849 0.8401 0.0041 18 1 0.6280 -2.5591 0.8866 19 1 0.6206 -2.5548 -0.8933 20 1 2.9288 -3.5505 0.8295 21 1 2.4522 -4.0405 -2.1351 22 1 3.3277 -2.5983 -1.5579 23 1 4.9662 -6.3279 -1.0920 24 1 4.2495 -5.8434 -2.6411 25 1 2.9308 -7.5227 -1.1716 26 1 2.0444 -6.1529 -1.8649 27 1 0.9516 -4.9041 1.0693 28 1 0.8080 -5.0230 -0.6961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260121942.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:11 Heat of formation + Delta-G solvation = -122.764931 kcal Electronic energy + Delta-G solvation = -11867.948666 eV Core-core repulsion = 9689.950167 eV Total energy + Delta-G solvation = -2177.998499 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.84718 -37.53466 -36.37091 -34.11707 -30.61010 -28.61312 -27.42214 -24.71245 -22.92760 -21.35946 -18.74275 -18.15778 -17.48666 -16.65255 -16.45800 -16.09708 -15.39595 -14.73568 -14.72651 -14.17319 -13.91146 -13.13728 -12.89971 -12.59986 -12.40012 -12.22388 -11.80945 -11.66748 -11.41104 -11.14937 -10.67612 -10.53942 -10.16852 -8.20720 -6.30077 1.40711 1.41352 1.52916 2.40932 2.73811 3.06351 3.15166 3.84446 3.88215 4.12639 4.24301 4.36162 4.45723 4.50269 4.68964 4.69724 4.90745 4.97428 5.11187 5.27889 5.44845 5.63898 5.80605 6.20132 6.28764 6.50189 6.83922 7.38640 8.90925 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.067592 B = 0.010482 C = 0.009456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.148777 B = 2670.526325 C = 2960.444831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.136 4.136 11 C 0.086 3.914 12 O -0.410 6.410 13 C 0.024 3.976 14 C 0.020 3.980 15 O -0.387 6.387 16 C 0.071 3.929 17 H 0.264 0.736 18 H -0.003 1.003 19 H 0.003 0.997 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -10.355 -4.099 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.155 4.155 11 C 0.009 3.991 12 O -0.329 6.329 13 C -0.052 4.052 14 C -0.057 4.057 15 O -0.305 6.305 16 C -0.005 4.005 17 H 0.073 0.927 18 H 0.016 0.984 19 H 0.021 0.979 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.100 0.900 23 H 0.120 0.880 24 H 0.097 0.903 25 H 0.139 0.861 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.895 -10.275 -3.861 12.019 hybrid contribution -0.214 1.116 -0.173 1.149 sum 4.681 -9.159 -4.034 11.049 Atomic orbital electron populations 1.70075 1.07598 1.27772 1.51659 1.25890 0.95706 1.03036 0.94775 0.85517 0.78622 0.78823 0.78547 1.19612 1.20726 1.19233 1.21589 0.93340 0.92055 1.50405 0.92437 1.18893 0.93545 0.91990 0.95543 1.21333 0.98703 0.96170 0.99342 1.22263 0.86226 0.95509 0.95142 1.87433 1.36443 1.22417 1.86630 1.24022 0.99634 0.81215 1.00349 1.23144 0.95867 1.01502 0.85222 1.87677 1.66273 1.47830 1.28753 1.21781 0.91031 0.84705 1.02934 0.92724 0.98441 0.97867 0.92884 0.92775 0.90020 0.87997 0.90291 0.86117 0.92473 0.89319 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.54 15 2 C 0.00 0.22 5.46 84.66 0.46 0.69 15 3 Si 0.96 44.36 29.54 68.60 2.03 46.39 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 7 C -0.54 -30.28 8.13 25.60 0.21 -30.07 15 8 H 0.06 3.20 7.15 -2.91 -0.02 3.18 15 9 C 0.04 1.94 4.38 29.85 0.13 2.08 15 10 C -0.14 -5.84 2.10 -12.35 -0.03 -5.87 15 11 C 0.09 3.37 5.67 72.37 0.41 3.78 15 12 O -0.41 -15.16 10.29 -129.60 -1.33 -16.50 15 13 C 0.02 0.62 7.14 72.34 0.52 1.14 15 14 C 0.02 0.51 6.12 72.34 0.44 0.95 15 15 O -0.39 -12.91 10.50 -129.18 -1.36 -14.27 15 16 C 0.07 2.57 5.39 70.04 0.38 2.95 15 17 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 18 H 0.00 -0.15 8.12 -2.38 -0.02 -0.17 15 19 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 20 H 0.05 2.49 8.14 -2.38 -0.02 2.47 15 21 H 0.05 1.89 7.06 -2.39 -0.02 1.87 15 22 H 0.08 3.58 6.57 -2.38 -0.02 3.56 15 23 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 25 H 0.12 2.20 8.14 -2.39 -0.02 2.19 15 26 H 0.06 1.36 6.74 -2.39 -0.02 1.35 15 27 H 0.09 3.16 8.13 -2.38 -0.02 3.14 15 28 H 0.06 2.00 7.48 -2.39 -0.02 1.98 15 Total: -1.00 -64.47 229.57 3.27 -61.20 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.13 Total: 3.08 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 2.52 Total: -24.36 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -2.69 Total: -30.76 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.47 3.27 -61.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121942.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.566 kcal (2) G-P(sol) polarization free energy of solvation -64.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds