Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09009 * 110.09254 * 55.14296 * 3 2 1 5 5 O 1.44388 * 110.11666 * 293.54963 * 3 2 1 6 6 C 1.44837 * 103.23554 * 201.59844 * 5 3 2 7 7 C 1.54455 * 102.89734 * 36.61114 * 6 5 3 8 8 H 1.08990 * 110.32458 * 97.10581 * 7 6 5 9 9 C 1.53003 * 110.31844 * 219.20449 * 7 6 5 10 10 C 1.50697 * 109.47135 * 184.99710 * 9 7 6 11 11 H 1.08003 * 119.99762 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00066 * 179.97438 * 10 9 7 13 13 N 1.31517 * 120.00171 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99880 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47294 * 89.99810 * 14 12 10 16 16 H 1.48502 * 109.46896 * 209.99810 * 14 12 10 17 17 H 1.48499 * 109.47205 * 329.99533 * 14 12 10 18 18 O 1.43785 * 110.11844 * 176.79989 * 3 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 23 23 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 24 24 H 1.09003 * 110.73036 * 154.95999 * 6 5 3 25 25 H 1.09000 * 110.72886 * 278.08122 * 6 5 3 26 26 H 1.08999 * 109.46674 * 304.99905 * 9 7 6 27 27 H 1.09000 * 109.47300 * 64.99333 * 9 7 6 28 28 H 0.96999 * 120.00343 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6133 1.9905 0.8401 5 8 1.6949 2.0912 -1.2429 6 6 2.6444 3.1820 -1.3224 7 6 3.9287 2.5653 -0.7260 8 1 4.5843 2.2125 -1.5221 9 6 4.6564 3.5918 0.1445 10 6 5.9653 3.0128 0.6162 11 1 6.2499 2.0128 0.3240 12 6 6.7999 3.7600 1.4200 13 7 7.9420 3.2545 1.8321 14 14 6.3079 5.4899 1.9248 15 1 5.5415 5.4357 3.1956 16 1 7.5275 6.3151 2.1170 17 1 5.4637 6.0942 0.8630 18 8 3.4758 1.4592 0.0754 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 2.8045 3.4794 -2.3587 25 1 2.3080 4.0305 -0.7266 26 1 4.8468 4.4928 -0.4387 27 1 4.0376 3.8410 1.0065 28 1 8.5293 3.7803 2.3972 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133738.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = -106.221779 kcal Electronic energy + Delta-G solvation = -11675.960513 eV Core-core repulsion = 9498.679379 eV Total energy + Delta-G solvation = -2177.281134 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.85764 -34.68122 -33.76919 -32.75205 -30.70248 -27.16726 -24.94412 -22.93984 -21.24146 -20.40082 -16.83681 -16.61777 -16.01686 -15.68198 -14.53821 -13.75928 -13.55631 -13.28231 -12.85827 -12.43343 -12.30418 -11.92265 -11.52373 -11.43372 -11.24558 -10.89987 -10.52303 -10.24470 -9.77889 -9.67062 -9.29135 -8.87226 -8.54975 -6.03281 -4.01064 3.29213 3.36408 3.37429 4.02125 4.34892 4.43738 5.12672 5.17571 5.25119 5.30317 5.37170 5.42015 5.63118 5.73926 5.88084 5.98065 6.02049 6.27759 6.29599 6.34706 6.66353 6.93401 7.18661 7.61954 7.77015 8.53918 9.03598 9.57265 11.10322 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.063797 B = 0.010038 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.789172 B = 2788.699524 C = 2936.633338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.224 3.776 4 H 0.066 0.934 5 O -0.386 6.386 6 C 0.014 3.986 7 C 0.069 3.931 8 H 0.087 0.913 9 C -0.023 4.023 10 C -0.511 4.511 11 H 0.075 0.925 12 C 0.066 3.934 13 N -0.902 5.902 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.267 1.267 18 O -0.365 6.365 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.018 0.982 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.677 -1.262 -4.132 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.128 3.872 4 H 0.083 0.917 5 O -0.307 6.307 6 C -0.063 4.063 7 C 0.012 3.988 8 H 0.104 0.896 9 C -0.060 4.060 10 C -0.549 4.549 11 H 0.094 0.906 12 C -0.135 4.135 13 N -0.541 5.541 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.192 1.192 18 O -0.286 6.286 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.118 0.882 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.558 -1.429 -4.059 13.275 hybrid contribution -0.065 1.165 0.454 1.252 sum -12.623 -0.264 -3.605 13.130 Atomic orbital electron populations 1.21667 0.94853 1.01654 1.02205 1.21642 0.96092 0.94495 1.03754 1.24314 0.82434 0.93976 0.86437 0.91698 1.89330 1.55554 1.44201 1.41640 1.24444 0.88407 0.90610 1.02792 1.23590 0.94086 0.87365 0.93739 0.89558 1.19941 0.96944 0.93981 0.95128 1.20994 1.00695 1.02661 1.30568 0.90639 1.25015 0.94823 0.98034 0.95617 1.69910 1.10845 1.37524 1.35822 0.86807 0.78118 0.85104 0.79389 1.20283 1.21284 1.19163 1.89020 1.18252 1.50665 1.70662 0.92102 0.92759 0.92418 0.89964 0.90711 0.88214 0.91180 0.95167 0.96337 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.83 37.16 0.37 -1.33 15 2 C -0.12 -1.76 6.06 -26.74 -0.16 -1.92 15 3 C 0.22 3.92 3.89 37.15 0.14 4.07 15 4 H 0.07 1.09 8.14 -51.92 -0.42 0.67 15 5 O -0.39 -6.71 11.16 -59.28 -0.66 -7.37 15 6 C 0.01 0.24 7.35 37.92 0.28 0.52 15 7 C 0.07 1.45 3.65 -25.97 -0.09 1.35 15 8 H 0.09 1.80 8.14 -51.93 -0.42 1.37 15 9 C -0.02 -0.54 3.66 -27.88 -0.10 -0.64 15 10 C -0.51 -14.86 9.55 -34.44 -0.33 -15.19 15 11 H 0.08 2.41 7.99 -52.48 -0.42 1.99 15 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 13 N -0.90 -28.16 13.96 55.43 0.77 -27.39 15 14 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 15 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 17 H -0.27 -6.21 6.54 56.52 0.37 -5.84 15 18 O -0.37 -7.97 10.83 -59.28 -0.64 -8.61 15 19 H 0.06 0.73 7.90 -51.93 -0.41 0.32 15 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.10 1.41 8.14 -51.93 -0.42 0.99 15 25 H 0.07 1.11 7.87 -51.93 -0.41 0.70 15 26 H 0.03 0.69 7.20 -51.93 -0.37 0.32 15 27 H 0.02 0.44 7.57 -51.93 -0.39 0.05 15 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 LS Contribution 237.47 15.07 3.58 3.58 Total: -1.00 -31.73 237.47 -5.75 -37.48 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -4.13 Total: -3.38 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 0.00 Total: -11.30 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.77 Total: -27.39 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.30 Total: -15.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.73 -5.75 -37.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133738.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.738 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds