Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09009 * 110.09254 * 55.14296 * 3 2 1 5 5 O 1.44388 * 110.11666 * 293.54963 * 3 2 1 6 6 C 1.44837 * 103.23554 * 201.59844 * 5 3 2 7 7 C 1.54455 * 102.89734 * 36.61114 * 6 5 3 8 8 H 1.08990 * 110.32458 * 97.10581 * 7 6 5 9 9 C 1.53003 * 110.31844 * 219.20449 * 7 6 5 10 10 C 1.50697 * 109.47135 * 184.99710 * 9 7 6 11 11 H 1.08003 * 119.99762 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00066 * 179.97438 * 10 9 7 13 13 N 1.31517 * 120.00171 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99880 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47294 * 89.99810 * 14 12 10 16 16 H 1.48502 * 109.46896 * 209.99810 * 14 12 10 17 17 H 1.48499 * 109.47205 * 329.99533 * 14 12 10 18 18 O 1.43785 * 110.11844 * 176.79989 * 3 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 23 23 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 24 24 H 1.09003 * 110.73036 * 154.95999 * 6 5 3 25 25 H 1.09000 * 110.72886 * 278.08122 * 6 5 3 26 26 H 1.08999 * 109.46674 * 304.99905 * 9 7 6 27 27 H 1.09000 * 109.47300 * 64.99333 * 9 7 6 28 28 H 0.96999 * 120.00343 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6133 1.9905 0.8401 5 8 1.6949 2.0912 -1.2429 6 6 2.6444 3.1820 -1.3224 7 6 3.9287 2.5653 -0.7260 8 1 4.5843 2.2125 -1.5221 9 6 4.6564 3.5918 0.1445 10 6 5.9653 3.0128 0.6162 11 1 6.2499 2.0128 0.3240 12 6 6.7999 3.7600 1.4200 13 7 7.9420 3.2545 1.8321 14 14 6.3079 5.4899 1.9248 15 1 5.5415 5.4357 3.1956 16 1 7.5275 6.3151 2.1170 17 1 5.4637 6.0942 0.8630 18 8 3.4758 1.4592 0.0754 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 2.8045 3.4794 -2.3587 25 1 2.3080 4.0305 -0.7266 26 1 4.8468 4.4928 -0.4387 27 1 4.0376 3.8410 1.0065 28 1 8.5293 3.7803 2.3972 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260133738.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = -128.360577 kcal Electronic energy + Delta-G solvation = -11676.920523 eV Core-core repulsion = 9498.679379 eV Total energy + Delta-G solvation = -2178.241144 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.31186 -36.25439 -35.27450 -34.51606 -32.49075 -28.88359 -26.17629 -24.75826 -22.49176 -22.13211 -18.96836 -18.08924 -17.46967 -17.03691 -16.51705 -15.31121 -14.92514 -14.70048 -14.53036 -13.94425 -13.75768 -13.58840 -13.30766 -12.77830 -12.47746 -12.28902 -12.07619 -11.89119 -11.67248 -11.37724 -11.12846 -10.78845 -10.47700 -8.28776 -6.33669 1.36088 1.38494 1.49648 2.35883 2.64697 2.98148 3.10220 3.69150 3.91752 4.02640 4.04457 4.27991 4.36349 4.50880 4.61885 4.68122 4.83615 4.98912 5.04558 5.06712 5.25397 5.37379 5.39808 5.60033 6.14872 6.27758 6.72903 7.28958 8.88771 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.063797 B = 0.010038 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.789172 B = 2788.699524 C = 2936.633338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.215 3.785 4 H 0.075 0.925 5 O -0.386 6.386 6 C 0.024 3.976 7 C 0.063 3.937 8 H 0.075 0.925 9 C -0.018 4.018 10 C -0.525 4.525 11 H 0.023 0.977 12 C 0.000 4.000 13 N -0.954 5.954 14 Si 0.956 3.044 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.237 1.237 18 O -0.401 6.401 19 H 0.057 0.943 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.130 0.870 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.895 0.391 -4.404 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.120 3.880 4 H 0.092 0.908 5 O -0.307 6.307 6 C -0.052 4.052 7 C 0.005 3.995 8 H 0.093 0.907 9 C -0.056 4.056 10 C -0.563 4.563 11 H 0.042 0.958 12 C -0.196 4.196 13 N -0.595 5.595 14 Si 0.778 3.222 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.160 1.160 18 O -0.323 6.323 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.148 0.852 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.803 0.213 -4.352 15.431 hybrid contribution 0.669 0.527 0.530 1.004 sum -14.134 0.741 -3.822 14.660 Atomic orbital electron populations 1.21630 0.92346 1.03148 1.02469 1.21690 0.98155 0.92503 1.03544 1.24652 0.80496 0.95995 0.86838 0.90810 1.89329 1.55361 1.44485 1.41515 1.24473 0.85767 0.90388 1.04614 1.23525 0.96035 0.86929 0.92984 0.90723 1.19877 0.94478 0.95270 0.95950 1.21291 1.03336 1.00878 1.30842 0.95816 1.26096 0.94509 1.03544 0.95449 1.70086 1.12503 1.39892 1.37013 0.85585 0.78310 0.78435 0.79848 1.19474 1.20888 1.15957 1.88995 1.21052 1.51125 1.71112 0.92385 0.91880 0.90373 0.89864 0.91320 0.85177 0.89450 0.93202 0.95859 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.83 71.98 0.71 -2.16 15 2 C -0.12 -3.33 6.06 30.59 0.19 -3.15 15 3 C 0.21 7.24 3.89 71.98 0.28 7.52 15 4 H 0.07 2.34 8.14 -2.38 -0.02 2.32 15 5 O -0.39 -12.48 11.16 -125.98 -1.41 -13.88 15 6 C 0.02 0.73 7.35 72.48 0.53 1.26 15 7 C 0.06 2.57 3.65 31.09 0.11 2.68 15 8 H 0.07 3.16 8.14 -2.39 -0.02 3.14 15 9 C -0.02 -0.86 3.66 29.85 0.11 -0.75 15 10 C -0.53 -31.28 9.55 25.60 0.24 -31.03 15 11 H 0.02 1.59 7.99 -2.91 -0.02 1.57 15 12 C 0.00 0.01 5.47 84.65 0.46 0.48 15 13 N -0.95 -61.26 13.96 21.45 0.30 -60.96 15 14 Si 0.96 43.91 27.47 68.60 1.88 45.79 15 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 17 H -0.24 -9.65 6.54 99.48 0.65 -9.00 15 18 O -0.40 -17.60 10.83 -125.98 -1.36 -18.96 15 19 H 0.06 1.24 7.90 -2.39 -0.02 1.22 15 20 H 0.06 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.08 1.30 8.14 -2.38 -0.02 1.28 15 22 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.13 3.18 8.14 -2.39 -0.02 3.16 15 25 H 0.09 2.40 7.87 -2.39 -0.02 2.38 15 26 H 0.05 2.14 7.20 -2.39 -0.02 2.12 15 27 H 0.02 1.06 7.57 -2.39 -0.02 1.04 15 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 15 Total: -1.00 -69.99 237.47 3.11 -66.88 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.06 Total: 6.29 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 2.64 Total: -25.15 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.30 Total: -60.96 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -2.77 Total: -32.85 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -69.99 3.11 -66.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133738.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.482 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds