Wall clock time and date at job start Mon Mar 30 2020 02:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47311 * 2 1 4 4 H 1.08998 * 110.35933 * 55.86377 * 3 2 1 5 5 O 1.44403 * 110.39797 * 293.54606 * 3 2 1 6 6 C 1.44289 * 104.60842 * 201.87400 * 5 3 2 7 7 C 1.54175 * 104.94433 * 23.63523 * 6 5 3 8 8 H 1.08999 * 110.34891 * 241.03091 * 7 6 5 9 9 C 1.53000 * 110.34423 * 118.86592 * 7 6 5 10 10 C 1.50703 * 109.46912 * 175.00438 * 9 7 6 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 O 1.44297 * 104.93907 * 0.02562 * 7 6 5 19 19 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47121 * 300.00172 * 1 2 3 21 21 H 1.08999 * 109.46684 * 60.00257 * 1 2 3 22 22 H 1.08997 * 109.47595 * 239.99221 * 2 1 3 23 23 H 1.09005 * 109.47173 * 119.99271 * 2 1 3 24 24 H 1.09009 * 110.34295 * 264.77291 * 6 5 3 25 25 H 1.09004 * 110.34869 * 142.50917 * 6 5 3 26 26 H 1.09002 * 109.47398 * 295.00516 * 9 7 6 27 27 H 1.09001 * 109.47194 * 55.00696 * 9 7 6 28 28 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6258 1.9912 0.8458 5 8 1.6981 2.0973 -1.2408 6 6 2.6364 3.1882 -1.3473 7 6 3.8406 2.7626 -0.4836 8 1 3.9935 3.4722 0.3295 9 6 5.1020 2.6600 -1.3433 10 6 6.2879 2.3637 -0.4619 11 1 6.1550 2.2586 0.6047 12 6 7.5425 2.2267 -1.0171 13 7 7.7042 2.3543 -2.3161 14 14 9.0123 1.8587 0.0754 15 1 9.1796 0.3886 0.2015 16 1 10.2360 2.4464 -0.5267 17 1 8.7898 2.4487 1.4198 18 8 3.4836 1.4659 0.0392 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5137 0.8901 24 1 2.1962 4.1061 -0.9576 25 1 2.9431 3.3245 -2.3844 26 1 4.9812 1.8581 -2.0716 27 1 5.2639 3.6033 -1.8651 28 1 8.5869 2.2583 -2.7067 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133743.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:05 Heat of formation + Delta-G solvation = -110.523498 kcal Electronic energy + Delta-G solvation = -11637.116465 eV Core-core repulsion = 9459.648795 eV Total energy + Delta-G solvation = -2177.467670 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.72250 -34.54281 -33.72276 -32.80162 -30.36292 -26.73611 -24.89423 -23.12366 -21.33114 -20.22369 -17.00307 -15.99501 -15.78168 -15.36896 -14.80141 -14.28682 -13.58703 -12.97613 -12.51832 -12.27820 -12.14794 -11.51941 -11.36979 -11.20437 -11.09882 -10.81418 -10.58809 -10.45167 -9.92128 -9.43551 -9.06339 -8.96111 -8.37135 -5.99668 -4.00872 3.34668 3.40202 3.44030 4.15054 4.40335 4.47895 5.14746 5.26608 5.34279 5.37296 5.41294 5.53933 5.63480 5.84269 5.98671 6.02716 6.11648 6.30112 6.37971 6.59853 6.81009 7.34145 7.58635 7.82425 7.97227 8.38611 9.03137 9.62150 11.11985 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064599 B = 0.009537 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.336842 B = 2935.226060 C = 3166.276173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.219 3.781 4 H 0.062 0.938 5 O -0.387 6.387 6 C 0.018 3.982 7 C 0.056 3.944 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.512 4.512 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 O -0.361 6.361 19 H 0.057 0.943 20 H 0.052 0.948 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 -0.822 3.848 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.124 3.876 4 H 0.079 0.921 5 O -0.308 6.308 6 C -0.059 4.059 7 C -0.002 4.002 8 H 0.088 0.912 9 C -0.014 4.014 10 C -0.550 4.550 11 H 0.076 0.924 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 O -0.281 6.281 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.851 -1.054 3.640 11.493 hybrid contribution 0.907 0.067 0.617 1.099 sum -9.944 -0.987 4.256 10.861 Atomic orbital electron populations 1.21663 0.94830 1.01666 1.02159 1.21537 0.96000 0.94147 1.03897 1.24443 0.82419 0.94143 0.86629 0.92121 1.89147 1.55129 1.44694 1.41813 1.24208 0.89224 0.89609 1.02838 1.23878 0.96551 0.83793 0.95952 0.91224 1.19320 0.89277 0.98191 0.94609 1.21129 0.91932 1.48052 0.93926 0.92413 1.25002 0.99043 0.95434 0.95019 1.69956 1.23120 1.50440 1.10225 0.86537 0.81970 0.78540 0.80629 1.20631 1.21277 1.19881 1.89388 1.18688 1.35862 1.84185 0.92393 0.92920 0.91982 0.90333 0.90167 0.92041 0.88590 0.95306 0.94917 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.83 37.16 0.37 -1.36 15 2 C -0.12 -1.76 6.09 -26.73 -0.16 -1.92 15 3 C 0.22 3.89 3.81 37.16 0.14 4.03 15 4 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 5 O -0.39 -7.24 11.13 -59.42 -0.66 -7.90 15 6 C 0.02 0.33 7.55 37.77 0.29 0.61 15 7 C 0.06 1.21 3.48 -26.12 -0.09 1.12 15 8 H 0.07 1.45 8.14 -51.93 -0.42 1.02 15 9 C 0.02 0.60 4.50 -27.88 -0.13 0.48 15 10 C -0.51 -14.84 9.00 -34.44 -0.31 -15.15 15 11 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 15 14 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 15 15 H -0.28 -6.87 7.11 56.52 0.40 -6.46 15 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 18 O -0.36 -8.06 11.05 -59.42 -0.66 -8.72 15 19 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.06 0.78 7.91 -51.93 -0.41 0.37 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.08 1.11 8.14 -51.93 -0.42 0.68 15 24 H 0.06 0.94 8.14 -51.92 -0.42 0.52 15 25 H 0.10 1.73 7.71 -51.93 -0.40 1.33 15 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 240.99 15.07 3.63 3.63 Total: -1.00 -31.35 240.99 -6.12 -37.48 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -4.16 Total: -4.42 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 0.01 Total: -10.66 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.32 Total: -16.62 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.35 -6.12 -37.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133743.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.047 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds