Wall clock time and date at job start Mon Mar 30 2020 02:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47311 * 2 1 4 4 H 1.08998 * 110.35933 * 55.86377 * 3 2 1 5 5 O 1.44403 * 110.39797 * 293.54606 * 3 2 1 6 6 C 1.44289 * 104.60842 * 201.87400 * 5 3 2 7 7 C 1.54175 * 104.94433 * 23.63523 * 6 5 3 8 8 H 1.08999 * 110.34891 * 241.03091 * 7 6 5 9 9 C 1.53000 * 110.34423 * 118.86592 * 7 6 5 10 10 C 1.50703 * 109.46912 * 175.00438 * 9 7 6 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 O 1.44297 * 104.93907 * 0.02562 * 7 6 5 19 19 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47121 * 300.00172 * 1 2 3 21 21 H 1.08999 * 109.46684 * 60.00257 * 1 2 3 22 22 H 1.08997 * 109.47595 * 239.99221 * 2 1 3 23 23 H 1.09005 * 109.47173 * 119.99271 * 2 1 3 24 24 H 1.09009 * 110.34295 * 264.77291 * 6 5 3 25 25 H 1.09004 * 110.34869 * 142.50917 * 6 5 3 26 26 H 1.09002 * 109.47398 * 295.00516 * 9 7 6 27 27 H 1.09001 * 109.47194 * 55.00696 * 9 7 6 28 28 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6258 1.9912 0.8458 5 8 1.6981 2.0973 -1.2408 6 6 2.6364 3.1882 -1.3473 7 6 3.8406 2.7626 -0.4836 8 1 3.9935 3.4722 0.3295 9 6 5.1020 2.6600 -1.3433 10 6 6.2879 2.3637 -0.4619 11 1 6.1550 2.2586 0.6047 12 6 7.5425 2.2267 -1.0171 13 7 7.7042 2.3543 -2.3161 14 14 9.0123 1.8587 0.0754 15 1 9.1796 0.3886 0.2015 16 1 10.2360 2.4464 -0.5267 17 1 8.7898 2.4487 1.4198 18 8 3.4836 1.4659 0.0392 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5137 0.8901 24 1 2.1962 4.1061 -0.9576 25 1 2.9431 3.3245 -2.3844 26 1 4.9812 1.8581 -2.0716 27 1 5.2639 3.6033 -1.8651 28 1 8.5869 2.2583 -2.7067 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260133743.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:04 Heat of formation + Delta-G solvation = -131.445878 kcal Electronic energy + Delta-G solvation = -11638.023727 eV Core-core repulsion = 9459.648795 eV Total energy + Delta-G solvation = -2178.374933 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.25090 -36.20476 -35.31998 -34.51451 -32.17366 -28.58097 -26.15411 -25.07650 -22.76747 -21.83677 -18.83444 -17.81940 -17.28748 -16.99447 -16.60295 -15.94180 -14.77285 -14.39279 -14.33689 -13.92757 -13.76712 -13.19237 -13.07993 -12.82177 -12.56631 -12.38451 -12.33539 -11.92855 -11.76092 -11.27877 -10.88062 -10.62263 -10.59611 -8.22229 -6.32160 1.39114 1.41205 1.52131 2.40201 2.69339 2.99925 3.13918 3.76688 3.85699 4.03869 4.05719 4.32277 4.38776 4.53066 4.58569 4.84134 4.88519 5.01063 5.06461 5.25126 5.35653 5.42564 5.47741 5.73959 6.07238 6.22815 6.79888 7.35750 8.89830 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064599 B = 0.009537 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.336842 B = 2935.226060 C = 3166.276173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.210 3.790 4 H 0.089 0.911 5 O -0.395 6.395 6 C 0.024 3.976 7 C 0.057 3.943 8 H 0.082 0.918 9 C 0.027 3.973 10 C -0.535 4.535 11 H 0.056 0.944 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.263 1.263 18 O -0.394 6.394 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.091 0.909 26 H -0.008 1.008 27 H 0.022 0.978 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.647 -0.782 5.254 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.116 3.884 4 H 0.106 0.894 5 O -0.316 6.316 6 C -0.052 4.052 7 C 0.000 4.000 8 H 0.099 0.901 9 C -0.010 4.010 10 C -0.572 4.572 11 H 0.074 0.926 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.202 1.202 16 H -0.203 1.203 17 H -0.187 1.187 18 O -0.315 6.315 19 H 0.096 0.904 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.109 0.891 26 H 0.011 0.989 27 H 0.040 0.960 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.557 -1.011 5.050 12.652 hybrid contribution 1.086 0.034 0.159 1.098 sum -10.470 -0.978 5.209 11.736 Atomic orbital electron populations 1.21623 0.92161 1.03166 1.02534 1.21626 0.98227 0.92301 1.03508 1.24921 0.80274 0.96175 0.87011 0.89416 1.89134 1.54879 1.45022 1.42604 1.24193 0.87986 0.90849 1.02187 1.23693 0.95900 0.84278 0.96133 0.90056 1.19169 0.91447 0.96114 0.94304 1.21499 0.93245 1.48319 0.94180 0.92612 1.25942 1.02267 0.95007 0.96493 1.70077 1.24079 1.51135 1.12046 0.85422 0.78057 0.78426 0.78992 1.20179 1.20335 1.18686 1.89340 1.21802 1.36062 1.84333 0.90404 0.91255 0.92827 0.92238 0.89106 0.88127 0.89076 0.98943 0.95950 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.83 71.98 0.71 -2.19 15 2 C -0.12 -3.37 6.09 30.60 0.19 -3.18 15 3 C 0.21 7.15 3.81 71.98 0.27 7.43 15 4 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 5 O -0.40 -14.24 11.13 -125.85 -1.40 -15.64 15 6 C 0.02 0.86 7.55 72.38 0.55 1.40 15 7 C 0.06 2.47 3.48 30.99 0.11 2.58 15 8 H 0.08 3.29 8.14 -2.39 -0.02 3.27 15 9 C 0.03 1.44 4.50 29.85 0.13 1.58 15 10 C -0.53 -31.38 9.00 25.60 0.23 -31.15 15 11 H 0.06 3.22 7.74 -2.91 -0.02 3.19 15 12 C 0.00 0.03 5.46 84.65 0.46 0.50 15 13 N -0.93 -57.42 13.29 21.45 0.28 -57.13 15 14 Si 0.97 45.27 29.54 68.60 2.03 47.30 15 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 17 H -0.26 -11.73 7.11 99.48 0.71 -11.03 15 18 O -0.39 -17.51 11.05 -125.85 -1.39 -18.90 15 19 H 0.08 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.07 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.05 1.22 7.91 -2.39 -0.02 1.20 15 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.09 2.35 8.14 -2.38 -0.02 2.33 15 24 H 0.10 2.78 8.14 -2.38 -0.02 2.76 15 25 H 0.09 3.26 7.71 -2.39 -0.02 3.24 15 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 27 H 0.02 1.23 8.14 -2.39 -0.02 1.21 15 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 15 Total: -1.00 -67.44 240.99 3.29 -64.15 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.12 Total: 3.26 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 2.65 Total: -23.04 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.28 Total: -57.13 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -2.79 Total: -34.54 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.44 3.29 -64.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133743.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.296 kcal (2) G-P(sol) polarization free energy of solvation -67.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds