Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46972 * 2 1 4 4 H 1.08997 * 110.09160 * 304.85643 * 3 2 1 5 5 O 1.44384 * 110.11537 * 66.45134 * 3 2 1 6 6 C 1.44835 * 103.23318 * 158.46132 * 5 3 2 7 7 C 1.54447 * 102.89614 * 323.38860 * 6 5 3 8 8 H 1.09003 * 110.31966 * 262.79121 * 7 6 5 9 9 C 1.53004 * 110.31925 * 140.70108 * 7 6 5 10 10 C 1.50701 * 109.47211 * 175.00139 * 9 7 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 O 1.43781 * 110.16454 * 183.22356 * 3 2 1 19 19 H 1.09003 * 109.47352 * 60.00589 * 1 2 3 20 20 H 1.09007 * 109.47202 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47644 * 299.99847 * 1 2 3 22 22 H 1.09000 * 109.47386 * 239.99438 * 2 1 3 23 23 H 1.08998 * 109.46713 * 119.99722 * 2 1 3 24 24 H 1.09002 * 110.72704 * 205.03711 * 6 5 3 25 25 H 1.09001 * 110.88100 * 81.81421 * 6 5 3 26 26 H 1.09000 * 109.47211 * 54.99165 * 9 7 6 27 27 H 1.09007 * 109.46376 * 294.99708 * 9 7 6 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6131 1.9906 -0.8400 5 8 1.6947 2.0912 1.2429 6 6 2.6432 3.1830 1.3216 7 6 3.9278 2.5674 0.7248 8 1 4.5849 2.2171 1.5208 9 6 4.6528 3.5937 -0.1483 10 6 5.9621 3.0159 -0.6205 11 1 6.2486 2.0168 -0.3270 12 6 6.7969 3.7651 -1.4222 13 7 6.4481 4.9818 -1.7794 14 14 8.4234 3.0519 -2.0012 15 1 8.1702 1.8232 -2.7960 16 1 9.1292 4.0498 -2.8446 17 1 9.2636 2.7155 -0.8238 18 8 3.4756 1.4607 -0.0759 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8932 -0.5138 0.8900 24 1 2.8035 3.4808 2.3578 25 1 2.3089 4.0318 0.7251 26 1 4.8423 4.4960 0.4331 27 1 4.0325 3.8403 -1.0101 28 1 7.0356 5.5090 -2.3431 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133752.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = -110.607070 kcal Electronic energy + Delta-G solvation = -11640.763930 eV Core-core repulsion = 9463.292636 eV Total energy + Delta-G solvation = -2177.471294 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.74719 -34.57848 -33.70190 -32.79313 -30.33091 -26.74152 -24.88703 -23.12819 -21.17716 -20.48500 -16.53291 -16.39139 -15.93494 -15.59160 -14.58176 -13.72219 -13.47452 -13.27391 -12.74721 -12.28246 -11.91560 -11.79221 -11.34220 -11.31406 -11.05434 -10.86425 -10.50012 -10.49102 -9.82539 -9.62586 -9.12865 -8.72450 -8.38079 -6.00640 -4.01667 3.35759 3.39167 3.43091 4.12226 4.42282 4.47886 5.21074 5.25616 5.34823 5.38001 5.46887 5.50195 5.73152 5.84040 5.96207 6.04189 6.07518 6.35296 6.42737 6.44766 6.83049 7.36196 7.59654 7.82361 7.96908 8.38464 9.02511 9.61520 11.11057 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065241 B = 0.009505 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.072335 B = 2945.070706 C = 3179.535263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.225 3.775 4 H 0.066 0.934 5 O -0.388 6.388 6 C 0.016 3.984 7 C 0.060 3.940 8 H 0.080 0.920 9 C 0.014 3.986 10 C -0.511 4.511 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 O -0.370 6.370 19 H 0.054 0.946 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 -5.601 3.852 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.130 3.870 4 H 0.083 0.917 5 O -0.309 6.309 6 C -0.061 4.061 7 C 0.003 3.997 8 H 0.098 0.902 9 C -0.023 4.023 10 C -0.549 4.549 11 H 0.076 0.924 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 O -0.291 6.291 19 H 0.073 0.927 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.637 -5.653 3.782 10.994 hybrid contribution 0.958 -0.028 -0.442 1.055 sum -7.679 -5.681 3.340 10.119 Atomic orbital electron populations 1.21667 0.94878 1.01569 1.02267 1.21639 0.96106 0.94637 1.03554 1.24277 0.82475 0.93768 0.86519 0.91716 1.89311 1.55794 1.44247 1.41586 1.24427 0.88420 0.90602 1.02635 1.23839 0.94196 0.87679 0.93993 0.90217 1.19460 0.95540 0.92647 0.94679 1.21081 1.02667 1.00658 1.30477 0.92385 1.25002 0.98442 0.94877 0.96192 1.69942 1.37552 1.09568 1.36822 0.86598 0.83544 0.78775 0.78749 1.20180 1.21345 1.20229 1.88968 1.18308 1.50953 1.70842 0.92722 0.92501 0.92081 0.90099 0.90842 0.88452 0.90968 0.95096 0.95814 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.83 37.16 0.37 -1.39 15 2 C -0.12 -1.79 6.06 -26.73 -0.16 -1.95 15 3 C 0.22 4.09 3.89 37.16 0.14 4.24 15 4 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 5 O -0.39 -7.06 11.16 -59.28 -0.66 -7.72 15 6 C 0.02 0.28 7.36 37.92 0.28 0.56 15 7 C 0.06 1.30 3.65 -25.97 -0.09 1.21 15 8 H 0.08 1.70 8.14 -51.93 -0.42 1.28 15 9 C 0.01 0.36 4.59 -27.88 -0.13 0.23 15 10 C -0.51 -14.73 9.00 -34.44 -0.31 -15.03 15 11 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 13 N -0.90 -27.06 13.29 55.43 0.74 -26.33 15 14 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 18 O -0.37 -8.24 10.83 -59.28 -0.64 -8.88 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.06 0.57 8.14 -51.92 -0.42 0.15 15 21 H 0.06 0.76 7.90 -51.93 -0.41 0.35 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.10 1.49 8.14 -51.93 -0.42 1.07 15 25 H 0.07 1.26 7.86 -51.93 -0.41 0.85 15 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.02 0.66 8.14 -51.93 -0.42 0.23 15 28 H 0.26 7.43 8.31 -40.82 -0.34 7.10 15 LS Contribution 241.05 15.07 3.63 3.63 Total: -1.00 -30.98 241.05 -6.12 -37.10 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.16 Total: -4.19 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 0.00 Total: -10.62 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.30 Total: -16.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.98 -6.12 -37.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133752.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.508 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds