Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46972 * 2 1 4 4 H 1.08997 * 110.09160 * 304.85643 * 3 2 1 5 5 O 1.44384 * 110.11537 * 66.45134 * 3 2 1 6 6 C 1.44835 * 103.23318 * 158.46132 * 5 3 2 7 7 C 1.54447 * 102.89614 * 323.38860 * 6 5 3 8 8 H 1.09003 * 110.31966 * 262.79121 * 7 6 5 9 9 C 1.53004 * 110.31925 * 140.70108 * 7 6 5 10 10 C 1.50701 * 109.47211 * 175.00139 * 9 7 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 O 1.43781 * 110.16454 * 183.22356 * 3 2 1 19 19 H 1.09003 * 109.47352 * 60.00589 * 1 2 3 20 20 H 1.09007 * 109.47202 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47644 * 299.99847 * 1 2 3 22 22 H 1.09000 * 109.47386 * 239.99438 * 2 1 3 23 23 H 1.08998 * 109.46713 * 119.99722 * 2 1 3 24 24 H 1.09002 * 110.72704 * 205.03711 * 6 5 3 25 25 H 1.09001 * 110.88100 * 81.81421 * 6 5 3 26 26 H 1.09000 * 109.47211 * 54.99165 * 9 7 6 27 27 H 1.09007 * 109.46376 * 294.99708 * 9 7 6 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6131 1.9906 -0.8400 5 8 1.6947 2.0912 1.2429 6 6 2.6432 3.1830 1.3216 7 6 3.9278 2.5674 0.7248 8 1 4.5849 2.2171 1.5208 9 6 4.6528 3.5937 -0.1483 10 6 5.9621 3.0159 -0.6205 11 1 6.2486 2.0168 -0.3270 12 6 6.7969 3.7651 -1.4222 13 7 6.4481 4.9818 -1.7794 14 14 8.4234 3.0519 -2.0012 15 1 8.1702 1.8232 -2.7960 16 1 9.1292 4.0498 -2.8446 17 1 9.2636 2.7155 -0.8238 18 8 3.4756 1.4607 -0.0759 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8932 -0.5138 0.8900 24 1 2.8035 3.4808 2.3578 25 1 2.3089 4.0318 0.7251 26 1 4.8423 4.4960 0.4331 27 1 4.0325 3.8403 -1.0101 28 1 7.0356 5.5090 -2.3431 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260133752.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = -130.956262 kcal Electronic energy + Delta-G solvation = -11641.646337 eV Core-core repulsion = 9463.292636 eV Total energy + Delta-G solvation = -2178.353701 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29230 -36.24456 -35.29677 -34.51240 -32.13699 -28.57324 -26.19513 -25.05461 -22.49385 -22.24178 -18.53716 -18.07161 -17.48202 -17.03944 -16.60274 -15.30648 -14.93418 -14.65426 -14.25061 -13.89982 -13.58343 -13.53132 -13.17086 -12.78394 -12.50623 -12.40286 -12.29690 -11.99355 -11.74618 -11.17957 -11.13755 -10.60194 -10.43400 -8.22197 -6.31574 1.39342 1.42543 1.50544 2.40399 2.65418 2.99876 3.13876 3.74289 3.92832 4.02985 4.07549 4.30403 4.37108 4.52971 4.63951 4.73469 4.86046 5.02619 5.05224 5.23158 5.32353 5.40217 5.52511 5.73331 6.11843 6.24649 6.80118 7.36229 8.89496 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065241 B = 0.009505 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.072335 B = 2945.070706 C = 3179.535263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.215 3.785 4 H 0.065 0.935 5 O -0.385 6.385 6 C 0.024 3.976 7 C 0.061 3.939 8 H 0.082 0.918 9 C 0.019 3.981 10 C -0.534 4.534 11 H 0.053 0.947 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.964 3.036 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.265 1.265 18 O -0.397 6.397 19 H 0.060 0.940 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.129 0.871 25 H 0.074 0.926 26 H 0.021 0.979 27 H -0.004 1.004 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 -6.557 4.177 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.120 3.880 4 H 0.083 0.917 5 O -0.306 6.306 6 C -0.053 4.053 7 C 0.004 3.996 8 H 0.100 0.900 9 C -0.018 4.018 10 C -0.572 4.572 11 H 0.071 0.929 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.190 1.190 18 O -0.319 6.319 19 H 0.079 0.921 20 H 0.099 0.901 21 H 0.075 0.925 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.147 0.853 25 H 0.093 0.907 26 H 0.039 0.961 27 H 0.014 0.986 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.851 -6.615 4.118 11.792 hybrid contribution 0.982 0.281 -0.558 1.164 sum -7.868 -6.334 3.561 10.710 Atomic orbital electron populations 1.21641 0.92547 1.03206 1.02333 1.21677 0.98005 0.92071 1.03786 1.24623 0.80664 0.96090 0.86578 0.91734 1.89313 1.55549 1.44246 1.41493 1.24410 0.86327 0.90243 1.04277 1.23652 0.95856 0.86975 0.93140 0.89973 1.19317 0.94749 0.93532 0.94209 1.21447 1.04101 1.00662 1.31018 0.92861 1.25900 1.02268 0.95199 0.96163 1.70056 1.39011 1.10803 1.37361 0.85514 0.78963 0.78084 0.78571 1.19738 1.20518 1.19013 1.88930 1.20859 1.50847 1.71272 0.92140 0.90104 0.92526 0.89578 0.90923 0.85282 0.90742 0.96124 0.98567 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.83 71.98 0.71 -2.29 15 2 C -0.12 -3.26 6.06 30.59 0.19 -3.08 15 3 C 0.22 7.64 3.89 71.98 0.28 7.92 15 4 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 5 O -0.39 -13.38 11.16 -125.98 -1.41 -14.78 15 6 C 0.02 0.82 7.36 72.47 0.53 1.35 15 7 C 0.06 2.64 3.65 31.09 0.11 2.76 15 8 H 0.08 3.49 8.14 -2.39 -0.02 3.47 15 9 C 0.02 1.01 4.59 29.85 0.14 1.15 15 10 C -0.53 -31.19 9.00 25.60 0.23 -30.96 15 11 H 0.05 3.08 7.74 -2.91 -0.02 3.06 15 12 C 0.00 0.14 5.46 84.65 0.46 0.61 15 13 N -0.93 -56.64 13.29 21.45 0.28 -56.35 15 14 Si 0.96 45.08 29.54 68.60 2.03 47.11 15 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 16 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 18 O -0.40 -17.70 10.83 -125.98 -1.36 -19.06 15 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.08 1.36 8.14 -2.38 -0.02 1.34 15 21 H 0.06 1.27 7.90 -2.39 -0.02 1.25 15 22 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.13 3.64 8.14 -2.39 -0.02 3.62 15 25 H 0.07 2.54 7.86 -2.39 -0.02 2.52 15 26 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 27 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 15 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 Total: -1.00 -65.62 241.05 3.31 -62.31 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.12 Total: 3.33 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 2.65 Total: -22.55 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.35 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.77 Total: -33.85 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.62 3.31 -62.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133752.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.644 kcal (2) G-P(sol) polarization free energy of solvation -65.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds