Wall clock time and date at job start Mon Mar 30 2020 01:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.38379 * 119.99873 * 179.97438 * 10 9 7 12 12 N 1.31765 * 127.92576 * 359.68901 * 11 10 9 13 13 N 1.26403 * 117.48664 * 179.76301 * 12 11 10 14 14 N 1.28566 * 119.31404 * 0.57116 * 13 12 11 15 15 S 1.70152 * 105.25439 * 359.69362 * 14 13 12 16 16 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 18 18 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 19 19 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 5.3605 -2.8279 0.0095 12 7 6.3466 -1.9540 -0.0007 13 7 7.5270 -2.4062 0.0075 14 7 7.7136 -3.6783 0.0139 15 16 6.1545 -4.3596 0.0174 16 1 -0.4850 0.8400 -0.0004 17 1 3.8752 -0.6845 -0.8913 18 1 3.8746 -0.6756 0.8886 19 1 3.3697 -3.3124 0.0113 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260179496.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:18 Heat of formation + Delta-G solvation = 63.147577 kcal Electronic energy + Delta-G solvation = -8927.648746 eV Core-core repulsion = 6993.384202 eV Total energy + Delta-G solvation = -1934.264543 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.027 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.25507 -37.99955 -34.90271 -33.15593 -30.37160 -27.41253 -24.64409 -22.06574 -20.97195 -19.59789 -18.04277 -17.31316 -16.96194 -15.62619 -15.19587 -14.96701 -14.55338 -13.79466 -13.05755 -12.95208 -12.38079 -12.24821 -11.92440 -11.73701 -11.31566 -11.28251 -10.90232 -9.41028 -8.42096 -6.52061 -0.85911 -0.55874 0.32750 1.14514 1.36632 1.40226 1.49697 1.94358 2.27517 2.94070 3.30266 3.80579 4.53903 4.89832 5.13061 5.33670 6.04206 6.16102 6.54702 7.13649 7.47372 8.72090 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.082820 B = 0.010197 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.002675 B = 2745.269279 C = 3068.121345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.032 3.968 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.249 1.249 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.231 3.769 10 N -0.611 5.611 11 C 0.303 3.697 12 N -0.402 5.402 13 N 0.003 4.997 14 N -0.288 5.288 15 S 0.230 5.770 16 H 0.274 0.726 17 H 0.034 0.966 18 H 0.035 0.965 19 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 -5.912 0.054 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.169 4.169 3 Si 0.757 3.243 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.173 1.173 7 C -0.593 4.593 8 H 0.082 0.918 9 C 0.107 3.893 10 N -0.246 5.246 11 C -0.076 4.076 12 N -0.271 5.271 13 N 0.007 4.993 14 N -0.278 5.278 15 S 0.350 5.650 16 H 0.083 0.917 17 H 0.052 0.948 18 H 0.053 0.947 19 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 8.923 -5.972 0.056 10.737 hybrid contribution -1.065 0.926 -0.015 1.411 sum 7.858 -5.046 0.041 9.338 Atomic orbital electron populations 1.69962 1.07873 1.28853 1.49935 1.25530 0.95450 1.02638 0.93303 0.85917 0.79640 0.79171 0.79615 1.18944 1.20344 1.17316 1.21164 0.89448 0.94906 1.53736 0.91792 1.19617 0.93898 0.78037 0.97778 1.44507 0.98366 1.11856 1.69902 1.27365 0.92705 0.94494 0.93014 1.72317 0.93511 1.30191 1.31125 1.75216 1.12301 1.05349 1.06470 1.82687 1.11744 1.03234 1.30141 1.85236 1.00071 1.11283 1.68460 0.91690 0.94844 0.94718 0.72333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.29 13.96 21.45 0.30 -51.99 13 2 C 0.03 1.68 5.47 84.65 0.46 2.14 13 3 Si 0.93 40.13 27.47 68.60 1.88 42.02 13 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 13 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 13 6 H -0.25 -10.28 6.53 99.48 0.65 -9.63 13 7 C -0.55 -27.50 9.83 25.60 0.25 -27.25 13 8 H 0.06 3.35 7.84 -2.91 -0.02 3.33 13 9 C 0.23 9.68 4.91 85.64 0.42 10.10 13 10 N -0.61 -20.75 5.70 -352.10 -2.01 -22.76 13 11 C 0.30 9.98 8.53 178.80 1.53 11.51 13 12 N -0.40 -15.08 11.44 -57.79 -0.66 -15.74 13 13 N 0.00 0.11 12.76 37.02 0.47 0.58 13 14 N -0.29 -9.29 13.44 37.02 0.50 -8.79 13 15 S 0.23 6.09 23.98 -56.49 -1.35 4.73 13 16 H 0.27 14.44 8.31 -92.71 -0.77 13.67 13 17 H 0.03 1.43 7.58 -2.39 -0.02 1.41 13 18 H 0.03 1.51 7.18 -2.39 -0.02 1.49 13 19 H 0.44 12.65 8.44 -92.70 -0.78 11.86 13 Total: -1.00 -57.02 197.58 2.25 -54.77 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 0.45 Total: 0.67 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 2.66 Total: -3.50 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -1.40 Total: -98.69 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.02 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.35 Total: 4.73 kcal Total: -57.02 2.25 -54.77 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179496.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.918 kcal (2) G-P(sol) polarization free energy of solvation -57.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds