Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00112 * 2 1 4 4 H 1.48503 * 109.47045 * 269.99998 * 3 2 1 5 5 H 1.48502 * 109.47169 * 29.99638 * 3 2 1 6 6 H 1.48499 * 109.47489 * 149.99963 * 3 2 1 7 7 C 1.37880 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50688 * 120.00138 * 359.97438 * 7 2 1 10 10 N 1.46509 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.35168 * 126.40015 * 265.16109 * 10 9 7 12 12 N 1.30466 * 108.70938 * 180.23239 * 11 10 9 13 13 C 1.34172 * 109.27199 * 359.77505 * 12 11 10 14 14 C 1.34801 * 108.01242 * 359.97438 * 13 12 11 15 15 Cl 1.73599 * 126.59482 * 179.97438 * 14 13 12 16 16 H 0.96998 * 120.00436 * 0.02562 * 1 2 3 17 17 H 1.09003 * 109.47070 * 60.00283 * 9 7 2 18 18 H 1.09000 * 109.47847 * 300.00023 * 9 7 2 19 19 H 1.08002 * 125.64119 * 0.02562 * 11 10 9 20 20 H 1.07991 * 125.99113 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6127 0.0027 11 6 2.6545 -4.2830 -1.0808 12 7 3.4839 -5.2089 -0.6845 13 6 3.5952 -5.1612 0.6518 14 6 2.8041 -4.1664 1.1007 15 17 2.5838 -3.6855 2.7542 16 1 -0.4851 0.8400 -0.0004 17 1 0.6240 -2.5574 -0.8881 18 1 0.6246 -2.5563 0.8919 19 1 2.3726 -4.0868 -2.1047 20 1 4.2106 -5.8067 1.2607 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260214875.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = 43.693721 kcal Electronic energy + Delta-G solvation = -9168.114739 eV Core-core repulsion = 7198.670155 eV Total energy + Delta-G solvation = -1969.444583 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.30256 -36.04880 -34.11523 -32.10908 -28.60870 -27.32472 -23.37241 -20.78888 -20.29070 -16.98238 -16.50338 -14.65119 -14.48684 -14.26767 -13.42530 -12.83323 -12.45766 -11.82168 -11.35844 -11.22088 -10.96440 -10.77730 -10.32853 -10.05902 -9.45454 -8.74087 -8.69904 -7.75531 -6.36593 -4.44669 2.39513 2.65697 3.16050 3.22948 3.27853 3.63971 3.93342 4.24477 4.99224 5.26732 5.80084 5.93589 6.34440 6.83289 7.02940 7.27922 7.55815 7.74407 7.86440 8.55683 8.61788 9.23232 10.72085 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.047911 B = 0.013478 C = 0.012084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.276837 B = 2076.934792 C = 2316.467498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.227 3.773 10 N -0.421 5.421 11 C 0.190 3.810 12 N -0.505 5.505 13 C -0.025 4.025 14 C 0.026 3.974 15 Cl -0.022 7.022 16 H 0.269 0.731 17 H 0.055 0.945 18 H 0.052 0.948 19 H 0.205 0.795 20 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -4.507 1.802 5.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.109 3.891 10 N -0.101 5.101 11 C -0.093 4.093 12 N -0.224 5.224 13 C -0.177 4.177 14 C -0.119 4.119 15 Cl 0.006 6.994 16 H 0.079 0.921 17 H 0.073 0.927 18 H 0.070 0.930 19 H 0.221 0.779 20 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.821 -4.733 1.424 5.691 hybrid contribution -0.143 1.693 0.705 1.839 sum 2.678 -3.040 2.129 4.577 Atomic orbital electron populations 1.69911 1.06104 1.27865 1.48743 1.24922 0.94957 0.99573 0.94117 0.86340 0.79813 0.82045 0.78466 1.20223 1.20810 1.19538 1.21216 0.93682 0.89444 1.53576 0.91606 1.19914 0.87116 0.81800 1.00294 1.46069 1.32760 1.26273 1.04968 1.24674 0.97989 0.92959 0.93681 1.70311 1.19126 1.22289 1.10681 1.21910 1.03818 1.00353 0.91576 1.21761 1.05637 1.01371 0.83137 1.98332 1.96791 1.92210 1.12039 0.92129 0.92704 0.92999 0.77891 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 13.29 55.43 0.74 -23.64 14 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 14 3 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 14 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 14 7 C -0.54 -14.27 9.39 -34.44 -0.32 -14.59 14 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 14 9 C 0.23 5.48 5.75 -5.19 -0.03 5.45 14 10 N -0.42 -9.15 2.74 -116.36 -0.32 -9.47 14 11 C 0.19 3.75 12.56 -90.29 -1.13 2.61 14 12 N -0.50 -10.12 11.25 -14.60 -0.16 -10.28 14 13 C -0.03 -0.48 11.86 -17.75 -0.21 -0.69 14 14 C 0.03 0.53 7.49 -16.52 -0.12 0.40 14 15 Cl -0.02 -0.41 29.06 -51.86 -1.51 -1.92 14 16 H 0.27 6.97 8.31 -40.82 -0.34 6.63 14 17 H 0.06 1.33 8.13 -51.93 -0.42 0.90 14 18 H 0.05 1.32 8.07 -51.93 -0.42 0.90 14 19 H 0.20 3.32 8.06 -52.49 -0.42 2.90 14 20 H 0.17 2.64 8.06 -52.49 -0.42 2.22 14 LS Contribution 208.14 15.07 3.14 3.14 Total: -1.00 -27.95 208.14 -6.29 -34.24 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -1.23 Total: -2.56 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.92 Total: -5.10 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.25 Total: -43.39 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -27.95 -6.29 -34.24 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214875.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.932 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds