Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00112 * 2 1 4 4 H 1.48503 * 109.47045 * 269.99998 * 3 2 1 5 5 H 1.48502 * 109.47169 * 29.99638 * 3 2 1 6 6 H 1.48499 * 109.47489 * 149.99963 * 3 2 1 7 7 C 1.37880 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50688 * 120.00138 * 359.97438 * 7 2 1 10 10 N 1.46509 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.35168 * 126.40015 * 265.16109 * 10 9 7 12 12 N 1.30466 * 108.70938 * 180.23239 * 11 10 9 13 13 C 1.34172 * 109.27199 * 359.77505 * 12 11 10 14 14 C 1.34801 * 108.01242 * 359.97438 * 13 12 11 15 15 Cl 1.73599 * 126.59482 * 179.97438 * 14 13 12 16 16 H 0.96998 * 120.00436 * 0.02562 * 1 2 3 17 17 H 1.09003 * 109.47070 * 60.00283 * 9 7 2 18 18 H 1.09000 * 109.47847 * 300.00023 * 9 7 2 19 19 H 1.08002 * 125.64119 * 0.02562 * 11 10 9 20 20 H 1.07991 * 125.99113 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6127 0.0027 11 6 2.6545 -4.2830 -1.0808 12 7 3.4839 -5.2089 -0.6845 13 6 3.5952 -5.1612 0.6518 14 6 2.8041 -4.1664 1.1007 15 17 2.5838 -3.6855 2.7542 16 1 -0.4851 0.8400 -0.0004 17 1 0.6240 -2.5574 -0.8881 18 1 0.6246 -2.5563 0.8919 19 1 2.3726 -4.0868 -2.1047 20 1 4.2106 -5.8067 1.2607 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260214875.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = 28.465289 kcal Electronic energy + Delta-G solvation = -9168.775093 eV Core-core repulsion = 7198.670155 eV Total energy + Delta-G solvation = -1970.104938 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.88470 -37.56512 -35.97919 -33.96293 -30.17676 -29.20483 -25.28493 -22.34659 -21.90239 -18.92297 -18.24991 -16.50884 -16.15560 -15.83624 -15.02932 -14.41750 -14.27610 -13.71210 -13.12736 -12.83104 -12.73970 -12.46397 -12.11897 -11.93910 -11.05104 -10.73301 -10.44036 -9.30051 -8.37604 -6.52663 0.86108 1.07622 1.37936 1.39891 1.50256 2.09797 2.22290 2.39209 2.96444 3.83574 4.26079 4.33278 4.70036 4.87754 5.41646 5.50809 5.63679 5.76319 6.19842 6.58026 7.00393 7.19248 8.70988 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.047911 B = 0.013478 C = 0.012084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.276837 B = 2076.934792 C = 2316.467498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.243 3.757 10 N -0.437 5.437 11 C 0.190 3.810 12 N -0.514 5.514 13 C -0.016 4.016 14 C 0.001 3.999 15 Cl -0.014 7.014 16 H 0.273 0.727 17 H 0.050 0.950 18 H 0.033 0.967 19 H 0.231 0.769 20 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -4.391 1.649 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.072 0.928 9 C 0.123 3.877 10 N -0.118 5.118 11 C -0.093 4.093 12 N -0.234 5.234 13 C -0.167 4.167 14 C -0.142 4.142 15 Cl 0.014 6.986 16 H 0.082 0.918 17 H 0.068 0.932 18 H 0.051 0.949 19 H 0.248 0.752 20 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.583 -4.642 1.277 6.001 hybrid contribution -0.361 1.587 0.760 1.796 sum 3.221 -3.055 2.037 4.885 Atomic orbital electron populations 1.69988 1.07294 1.28858 1.49317 1.25669 0.95694 1.02595 0.93605 0.85414 0.78417 0.78313 0.78765 1.19331 1.20184 1.19699 1.21360 0.93207 0.90747 1.53733 0.92794 1.19500 0.87119 0.82001 0.99053 1.46019 1.33252 1.26387 1.06101 1.25337 0.97247 0.92219 0.94448 1.70377 1.19363 1.22426 1.11193 1.22443 1.02989 0.99778 0.91498 1.22109 1.06425 1.02147 0.83505 1.98327 1.96797 1.92209 1.11260 0.91786 0.93157 0.94883 0.75244 0.78418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.94 13.29 21.45 0.28 -49.65 14 2 C 0.03 1.35 5.46 84.66 0.46 1.81 14 3 Si 0.97 41.55 29.54 68.60 2.03 43.57 14 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 14 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 14 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 14 7 C -0.55 -28.95 9.39 25.60 0.24 -28.71 14 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 14 9 C 0.24 11.72 5.75 85.63 0.49 12.21 14 10 N -0.44 -18.64 2.74 -522.05 -1.43 -20.07 14 11 C 0.19 7.19 12.56 180.23 2.26 9.45 14 12 N -0.51 -19.58 11.25 -200.12 -2.25 -21.83 14 13 C -0.02 -0.59 11.86 83.55 0.99 0.40 14 14 C 0.00 0.05 7.49 83.12 0.62 0.67 14 15 Cl -0.01 -0.51 29.06 -2.72 -0.08 -0.59 14 16 H 0.27 13.99 8.31 -92.71 -0.77 13.22 14 17 H 0.05 2.44 8.13 -2.39 -0.02 2.42 14 18 H 0.03 1.70 8.07 -2.39 -0.02 1.69 14 19 H 0.23 7.07 8.06 -2.91 -0.02 7.05 14 20 H 0.20 5.68 8.06 -2.92 -0.02 5.66 14 Total: -1.00 -56.90 208.14 4.87 -52.04 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 1.24 Total: 0.69 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.07 Total: -4.15 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -3.40 Total: -91.55 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -56.90 4.87 -52.04 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214875.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.500 kcal (2) G-P(sol) polarization free energy of solvation -56.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds