Wall clock time and date at job start Mon Mar 30 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46750 * 2 1 4 4 C 1.53007 * 109.46685 * 240.00764 * 2 1 3 5 5 C 1.50698 * 109.47159 * 65.00222 * 4 2 1 6 6 H 1.08002 * 120.00274 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99869 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99715 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46666 * 119.99803 * 9 7 5 12 12 H 1.48492 * 109.47237 * 239.99854 * 9 7 5 13 13 C 1.52989 * 109.47257 * 120.00655 * 2 1 3 14 14 C 1.53046 * 113.15245 * 280.37140 * 13 2 1 15 15 S 1.81421 * 89.89146 * 211.85103 * 14 13 2 16 16 C 1.53046 * 113.15293 * 180.02562 * 13 2 1 17 17 H 1.09005 * 109.47422 * 59.99597 * 1 2 3 18 18 H 1.08998 * 109.47260 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.47171 * 299.99476 * 1 2 3 20 20 H 1.09004 * 109.46774 * 184.99820 * 4 2 1 21 21 H 1.08998 * 109.46898 * 304.99738 * 4 2 1 22 22 H 0.97001 * 119.99918 * 180.02562 * 8 7 5 23 23 H 1.08997 * 112.53000 * 50.18461 * 13 2 1 24 24 H 1.08999 * 113.14496 * 327.11375 * 14 13 2 25 25 H 1.08999 * 113.14487 * 96.59446 * 14 13 2 26 26 H 1.08997 * 113.14353 * 263.40546 * 16 13 2 27 27 H 1.09000 * 113.14751 * 32.84659 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6413 0.0574 -2.4766 6 1 1.0799 0.9745 -2.3756 7 6 1.9931 -0.4013 -3.7284 8 7 2.6771 -1.5179 -3.8513 9 14 1.4984 0.5633 -5.2497 10 1 0.7411 1.7744 -4.8433 11 1 2.7163 0.9689 -5.9963 12 1 0.6451 -0.2863 -6.1186 13 6 2.0400 -0.7213 1.2491 14 6 2.0018 0.1514 2.5057 15 16 3.4649 -0.7103 3.1445 16 6 3.5673 -0.7699 1.3344 17 1 -0.3634 0.5139 -0.8900 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5137 0.8900 20 1 3.1263 -0.7993 -1.2058 21 1 1.6053 -1.7197 -1.2954 22 1 2.9250 -1.8403 -4.7319 23 1 1.5715 -1.6954 1.3894 24 1 2.1816 1.2066 2.3001 25 1 1.1107 -0.0099 3.1124 26 1 3.9879 -1.7031 0.9598 27 1 4.0487 0.1075 0.9027 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260298978.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:16 Heat of formation + Delta-G solvation = -21.363658 kcal Electronic energy + Delta-G solvation = -9652.962186 eV Core-core repulsion = 7922.113647 eV Total energy + Delta-G solvation = -1730.848539 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.00606 -35.21878 -33.05397 -28.98464 -27.13521 -25.51883 -23.11888 -20.58994 -18.43900 -17.31086 -16.61750 -16.16722 -15.23612 -14.63750 -14.51716 -13.84973 -13.81041 -13.20727 -12.91886 -12.77682 -12.63529 -12.36977 -12.22584 -11.86563 -11.52461 -11.26979 -10.91338 -10.52853 -10.48716 -8.82407 -8.13800 -6.21962 0.86419 1.01791 1.41904 1.43590 1.55109 2.44959 3.20645 3.49321 3.82982 4.08697 4.43703 4.44206 4.51204 4.64372 4.68118 4.84914 4.94108 5.16667 5.33325 5.44887 5.55200 5.61950 5.88325 5.94898 6.34080 6.95783 7.46486 8.98004 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.073815 B = 0.009364 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.233735 B = 2989.529425 C = 3206.974431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 H 0.065 0.935 4 C 0.032 3.968 5 C -0.526 4.526 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.283 1.283 13 C -0.079 4.079 14 C -0.050 4.050 15 S -0.361 6.361 16 C -0.061 4.061 17 H 0.045 0.955 18 H 0.043 0.957 19 H 0.069 0.931 20 H -0.004 1.004 21 H -0.011 1.011 22 H 0.260 0.740 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 3.872 9.151 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.099 4.099 14 C -0.198 4.198 15 S -0.135 6.135 16 C -0.209 4.209 17 H 0.064 0.936 18 H 0.062 0.938 19 H 0.087 0.913 20 H 0.015 0.985 21 H 0.007 0.993 22 H 0.069 0.931 23 H 0.120 0.880 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.983 3.367 10.296 11.013 hybrid contribution -0.287 0.317 -2.012 2.057 sum -2.270 3.685 8.284 9.346 Atomic orbital electron populations 1.21646 0.94522 1.01153 1.01275 1.21065 0.96482 0.98511 0.92489 0.91636 1.19029 0.94821 0.94495 0.92222 1.21734 1.34012 1.08557 0.92111 0.91892 1.25891 0.95427 0.96018 1.02518 1.70103 1.40526 1.23030 1.24063 0.85536 0.77954 0.79022 0.79382 1.18406 1.20895 1.20882 1.22514 0.92970 0.99946 0.94496 1.24399 0.96738 1.02067 0.96556 1.88830 1.36804 1.74672 1.13173 1.24364 1.00881 1.06028 0.89647 0.93566 0.93796 0.91255 0.98538 0.99254 0.93112 0.87951 0.86670 0.86896 0.89756 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.96 71.98 0.65 -3.54 15 2 C -0.06 -2.32 2.05 -10.79 -0.02 -2.35 15 3 H 0.07 2.31 7.99 -2.39 -0.02 2.30 15 4 C 0.03 1.54 4.33 29.85 0.13 1.67 15 5 C -0.53 -28.25 8.41 25.60 0.22 -28.03 15 6 H 0.06 3.23 7.06 -2.91 -0.02 3.21 15 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 15 8 N -0.94 -55.96 13.29 21.45 0.28 -55.68 15 9 Si 0.96 43.34 29.54 68.60 2.03 45.36 15 10 H -0.26 -11.15 7.11 99.48 0.71 -10.45 15 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 13 C -0.08 -2.40 2.82 -10.77 -0.03 -2.43 15 14 C -0.05 -1.23 7.41 72.00 0.53 -0.70 15 15 S -0.36 -10.78 24.79 -56.49 -1.40 -12.18 15 16 C -0.06 -1.93 6.40 72.00 0.46 -1.47 15 17 H 0.05 1.66 6.95 -2.38 -0.02 1.64 15 18 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 19 H 0.07 1.75 8.11 -2.39 -0.02 1.73 15 20 H 0.00 -0.20 7.26 -2.38 -0.02 -0.21 15 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 23 H 0.10 3.13 8.14 -2.39 -0.02 3.11 15 24 H 0.11 2.59 8.01 -2.39 -0.02 2.57 15 25 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 26 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 27 H 0.10 3.28 8.12 -2.39 -0.02 3.26 15 Total: -1.00 -60.31 237.27 4.43 -55.88 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.12 Total: 3.09 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 2.39 Total: -36.48 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.40 Total: -12.18 kcal Total: -60.31 4.43 -55.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298978.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.517 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds