Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47133 * 2 1 4 4 C 1.52995 * 109.46735 * 119.99931 * 2 1 3 5 5 C 1.50697 * 109.47315 * 294.99536 * 4 2 1 6 6 H 1.08006 * 119.99986 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00070 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47184 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46947 * 119.99987 * 9 7 5 12 12 H 1.48500 * 109.47003 * 239.99997 * 9 7 5 13 13 C 1.53003 * 109.46602 * 239.99577 * 2 1 3 14 14 C 1.55880 * 110.82294 * 60.00602 * 13 2 1 15 15 S 1.83090 * 82.44112 * 142.73465 * 14 13 2 16 16 C 1.55889 * 110.81766 * 173.65368 * 13 2 1 17 17 H 1.08991 * 109.47665 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47131 * 300.00698 * 1 2 3 19 19 H 1.09005 * 109.46767 * 60.00156 * 1 2 3 20 20 H 1.09000 * 109.47602 * 55.00178 * 4 2 1 21 21 H 1.09008 * 109.47261 * 174.99619 * 4 2 1 22 22 H 0.97002 * 120.00127 * 180.02562 * 8 7 5 23 23 H 1.08994 * 110.40233 * 296.82708 * 13 2 1 24 24 H 1.08999 * 114.38240 * 29.34309 * 14 13 2 25 25 H 1.08996 * 114.37991 * 256.12724 * 14 13 2 26 26 H 1.09002 * 114.38391 * 103.86671 * 16 13 2 27 27 H 1.09005 * 114.38243 * 330.65404 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0571 2.4765 6 1 1.0800 0.9743 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6771 -1.5182 3.8511 9 14 1.4984 0.5629 5.2496 10 1 0.7412 1.7740 4.8434 11 1 0.6450 -0.2868 6.1185 12 1 2.7163 0.9685 5.9963 13 6 2.0399 -0.7214 -1.2492 14 6 1.5378 -0.0113 -2.5429 15 16 3.2047 -0.4655 -3.1489 16 6 3.5899 -0.6018 -1.3642 17 1 -0.3634 -1.0275 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 1.6053 -1.7198 1.2952 21 1 3.1263 -0.7996 1.2056 22 1 2.9243 -1.8411 4.7318 23 1 1.7318 -1.7668 -1.2367 24 1 1.3756 1.0610 -2.4335 25 1 0.7199 -0.5240 -3.0490 26 1 4.1327 -1.5060 -1.0888 27 1 4.0053 0.3043 -0.9230 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260298981.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -6.091175 kcal Electronic energy + Delta-G solvation = -9653.245347 eV Core-core repulsion = 7923.059073 eV Total energy + Delta-G solvation = -1730.186274 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.19725 -33.08183 -30.97590 -27.53901 -26.11762 -23.78414 -21.22243 -19.02648 -16.54694 -15.90417 -15.00151 -14.37937 -13.61317 -13.08426 -12.84959 -12.80592 -12.02786 -11.60269 -11.47741 -11.32428 -10.94054 -10.89833 -10.54433 -10.34375 -9.83248 -9.48125 -9.11291 -8.68016 -8.37054 -7.52319 -6.01713 -4.03334 1.99713 2.37691 3.29363 3.37443 3.40769 4.44061 4.86255 4.89884 5.20632 5.34530 5.61830 5.68279 5.89682 5.93715 6.02123 6.25745 6.34207 6.49319 6.89070 7.02334 7.10002 7.64511 7.78212 7.97817 8.40856 9.03242 9.60656 11.09557 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.075091 B = 0.009428 C = 0.008812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.790424 B = 2969.062560 C = 3176.787793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.060 0.940 4 C 0.027 3.973 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.108 4.108 14 C -0.052 4.052 15 S -0.365 6.365 16 C -0.039 4.039 17 H 0.045 0.955 18 H 0.063 0.937 19 H 0.032 0.968 20 H 0.016 0.984 21 H 0.018 0.982 22 H 0.259 0.741 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 2.225 -8.610 9.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.078 0.922 4 C -0.010 4.010 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.127 4.127 14 C -0.201 4.201 15 S -0.139 6.139 16 C -0.187 4.187 17 H 0.064 0.936 18 H 0.082 0.918 19 H 0.051 0.949 20 H 0.034 0.966 21 H 0.036 0.964 22 H 0.069 0.931 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.165 1.941 -9.692 9.953 hybrid contribution -0.702 0.569 1.926 2.128 sum -1.867 2.511 -7.766 8.373 Atomic orbital electron populations 1.21711 0.96018 1.00967 1.00359 1.21361 0.95365 0.99063 0.94353 0.92199 1.19137 0.96265 0.95424 0.90139 1.21279 1.34712 1.08350 0.91040 0.92557 1.25013 0.95274 0.95060 0.99107 1.69968 1.38994 1.21226 1.23347 0.86590 0.78291 0.80130 0.83326 1.19762 1.21078 1.21074 1.23459 0.92263 1.01849 0.95177 1.24812 0.94222 1.03677 0.97349 1.88243 1.17658 1.91060 1.16960 1.24819 0.99318 1.06034 0.88561 0.93564 0.91803 0.94861 0.96573 0.96402 0.93096 0.88658 0.87983 0.87976 0.87515 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.78 37.16 0.33 -2.01 15 2 C -0.08 -1.54 1.92 -90.62 -0.17 -1.71 15 3 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 4 C 0.03 0.67 4.37 -27.89 -0.12 0.54 15 5 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 15 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 15 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 8 N -0.90 -26.38 13.29 55.43 0.74 -25.65 15 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 13 C -0.11 -1.75 2.36 -87.54 -0.21 -1.96 15 14 C -0.05 -0.73 7.35 38.70 0.28 -0.45 15 15 S -0.36 -5.76 24.06 -107.50 -2.59 -8.35 15 16 C -0.04 -0.63 7.59 38.70 0.29 -0.34 15 17 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 18 H 0.06 1.22 6.95 -51.93 -0.36 0.86 15 19 H 0.03 0.48 7.29 -51.93 -0.38 0.10 15 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 21 H 0.02 0.45 7.36 -51.92 -0.38 0.07 15 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 23 H 0.10 1.58 8.14 -51.93 -0.42 1.16 15 24 H 0.10 1.34 8.10 -51.93 -0.42 0.92 15 25 H 0.10 1.26 8.14 -51.93 -0.42 0.83 15 26 H 0.11 1.66 8.14 -51.93 -0.42 1.24 15 27 H 0.11 1.69 8.10 -51.93 -0.42 1.27 15 LS Contribution 236.45 15.07 3.56 3.56 Total: -1.00 -28.73 236.45 -7.30 -36.03 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.00 Total: -3.15 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 0.02 Total: -18.68 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -5.76 SS G_CDS: -2.59 Total: -8.35 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.73 -7.30 -36.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298981.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.936 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds