Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47133 * 2 1 4 4 C 1.52995 * 109.46735 * 119.99931 * 2 1 3 5 5 C 1.50697 * 109.47315 * 294.99536 * 4 2 1 6 6 H 1.08006 * 119.99986 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00070 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47184 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46947 * 119.99987 * 9 7 5 12 12 H 1.48500 * 109.47003 * 239.99997 * 9 7 5 13 13 C 1.53003 * 109.46602 * 239.99577 * 2 1 3 14 14 C 1.55880 * 110.82294 * 60.00602 * 13 2 1 15 15 S 1.83090 * 82.44112 * 142.73465 * 14 13 2 16 16 C 1.55889 * 110.81766 * 173.65368 * 13 2 1 17 17 H 1.08991 * 109.47665 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47131 * 300.00698 * 1 2 3 19 19 H 1.09005 * 109.46767 * 60.00156 * 1 2 3 20 20 H 1.09000 * 109.47602 * 55.00178 * 4 2 1 21 21 H 1.09008 * 109.47261 * 174.99619 * 4 2 1 22 22 H 0.97002 * 120.00127 * 180.02562 * 8 7 5 23 23 H 1.08994 * 110.40233 * 296.82708 * 13 2 1 24 24 H 1.08999 * 114.38240 * 29.34309 * 14 13 2 25 25 H 1.08996 * 114.37991 * 256.12724 * 14 13 2 26 26 H 1.09002 * 114.38391 * 103.86671 * 16 13 2 27 27 H 1.09005 * 114.38243 * 330.65404 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0571 2.4765 6 1 1.0800 0.9743 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6771 -1.5182 3.8511 9 14 1.4984 0.5629 5.2496 10 1 0.7412 1.7740 4.8434 11 1 0.6450 -0.2868 6.1185 12 1 2.7163 0.9685 5.9963 13 6 2.0399 -0.7214 -1.2492 14 6 1.5378 -0.0113 -2.5429 15 16 3.2047 -0.4655 -3.1489 16 6 3.5899 -0.6018 -1.3642 17 1 -0.3634 -1.0275 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 1.6053 -1.7198 1.2952 21 1 3.1263 -0.7996 1.2056 22 1 2.9243 -1.8411 4.7318 23 1 1.7318 -1.7668 -1.2367 24 1 1.3756 1.0610 -2.4335 25 1 0.7199 -0.5240 -3.0490 26 1 4.1327 -1.5060 -1.0888 27 1 4.0053 0.3043 -0.9230 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260298981.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -21.850811 kcal Electronic energy + Delta-G solvation = -9653.928736 eV Core-core repulsion = 7923.059073 eV Total energy + Delta-G solvation = -1730.869663 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.66064 -35.03149 -32.64224 -29.15039 -27.61177 -25.53184 -22.85302 -20.49382 -18.47001 -17.33031 -16.66134 -16.03113 -15.15444 -14.62960 -14.42732 -14.00084 -13.81555 -13.22300 -12.94384 -12.79199 -12.67014 -12.52626 -12.19662 -12.09104 -11.51993 -11.18285 -10.99930 -10.50777 -10.11329 -8.76920 -8.15101 -6.23613 0.77667 1.16300 1.40740 1.42283 1.53962 2.43671 3.18965 3.60356 3.61608 3.91077 4.42146 4.44935 4.55246 4.63765 4.66583 4.84478 4.91599 5.11968 5.31019 5.42648 5.52963 5.59984 5.85690 5.92721 6.32656 6.93784 7.44857 8.96541 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.075091 B = 0.009428 C = 0.008812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.790424 B = 2969.062560 C = 3176.787793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 H 0.060 0.940 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.282 1.282 13 C -0.105 4.105 14 C -0.032 4.032 15 S -0.381 6.381 16 C -0.044 4.044 17 H 0.043 0.957 18 H 0.044 0.956 19 H 0.071 0.929 20 H -0.012 1.012 21 H -0.004 1.004 22 H 0.261 0.739 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 3.405 -9.308 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.125 4.125 14 C -0.180 4.180 15 S -0.155 6.155 16 C -0.192 4.192 17 H 0.062 0.938 18 H 0.063 0.937 19 H 0.090 0.910 20 H 0.007 0.993 21 H 0.014 0.986 22 H 0.069 0.931 23 H 0.109 0.891 24 H 0.136 0.864 25 H 0.145 0.855 26 H 0.121 0.879 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.274 3.133 -10.405 11.102 hybrid contribution -0.352 0.183 2.121 2.158 sum -2.627 3.317 -8.284 9.302 Atomic orbital electron populations 1.21663 0.94592 1.01115 1.01292 1.21182 0.96479 0.98449 0.93055 0.92188 1.19029 0.94781 0.94391 0.92313 1.21725 1.34090 1.08544 0.92177 0.92061 1.25893 0.95386 0.96031 1.02516 1.70099 1.40468 1.22985 1.24099 0.85531 0.77992 0.78992 0.79345 1.18505 1.20789 1.20801 1.23450 0.92274 1.01616 0.95111 1.24930 0.93622 1.04635 0.94799 1.88327 1.19484 1.91287 1.16442 1.24794 0.99416 1.05856 0.89117 0.93828 0.93715 0.91040 0.99346 0.98597 0.93065 0.89139 0.86388 0.85516 0.87880 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.78 71.98 0.63 -3.63 15 2 C -0.07 -2.62 1.92 -10.79 -0.02 -2.64 15 3 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 4 C 0.03 1.58 4.37 29.85 0.13 1.71 15 5 C -0.53 -28.62 8.41 25.60 0.22 -28.41 15 6 H 0.06 3.20 7.06 -2.91 -0.02 3.17 15 7 C 0.00 -0.06 5.46 84.65 0.46 0.40 15 8 N -0.94 -56.09 13.29 21.45 0.28 -55.80 15 9 Si 0.96 43.57 29.54 68.60 2.03 45.60 15 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 15 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 13 C -0.10 -3.24 2.36 -8.80 -0.02 -3.26 15 14 C -0.03 -0.79 7.35 72.98 0.54 -0.26 15 15 S -0.38 -11.32 24.06 -56.49 -1.36 -12.68 15 16 C -0.04 -1.38 7.59 72.98 0.55 -0.83 15 17 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 18 H 0.04 1.63 6.95 -2.39 -0.02 1.62 15 19 H 0.07 1.81 7.29 -2.38 -0.02 1.79 15 20 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 15 21 H 0.00 -0.23 7.36 -2.38 -0.02 -0.25 15 22 H 0.26 14.76 8.31 -92.71 -0.77 13.99 15 23 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 24 H 0.12 2.59 8.10 -2.39 -0.02 2.57 15 25 H 0.13 2.55 8.14 -2.39 -0.02 2.53 15 26 H 0.10 3.26 8.14 -2.39 -0.02 3.24 15 27 H 0.10 3.30 8.10 -2.38 -0.02 3.28 15 Total: -1.00 -61.08 236.45 4.56 -56.52 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.12 Total: 3.29 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 2.49 Total: -36.91 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.28 Total: -55.80 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -11.32 SS G_CDS: -1.36 Total: -12.68 kcal Total: -61.08 4.56 -56.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298981.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.665 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds