Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48493 * 109.46944 * 240.00157 * 3 2 1 5 5 H 1.48499 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46928 * 119.99857 * 3 2 1 7 7 C 1.38642 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99837 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.42898 * 117.00015 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.74250 * 111.26098 * 10 9 7 12 12 N 1.47925 * 85.99684 * 138.00445 * 11 10 9 13 13 C 1.34780 * 134.49772 * 155.35643 * 12 11 10 14 14 N 1.34774 * 120.00188 * 359.97438 * 13 12 11 15 15 O 1.21584 * 119.99378 * 179.97438 * 13 12 11 16 16 C 1.47579 * 91.00789 * 335.35638 * 12 11 10 17 17 H 0.97001 * 119.99948 * 359.97438 * 1 2 3 18 18 H 1.09002 * 112.94238 * 339.66666 * 10 9 7 19 19 H 1.09006 * 113.76402 * 252.36602 * 11 10 9 20 20 H 1.08997 * 113.76968 * 23.75227 * 11 10 9 21 21 H 0.97005 * 119.99957 * 0.02562 * 14 13 12 22 22 H 0.96995 * 120.00092 * 179.97438 * 14 13 12 23 23 H 1.09003 * 113.77049 * 270.34039 * 16 12 11 24 24 H 1.08993 * 113.77081 * 138.93800 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3343 -2.3691 0.0016 10 6 2.1125 -3.5676 0.0015 11 6 2.0225 -4.3652 1.3152 12 7 1.9372 -5.5679 0.4582 13 6 2.2275 -6.8728 0.6301 14 7 2.7143 -7.3051 1.8101 15 8 2.0500 -7.6598 -0.2795 16 6 1.4067 -4.7649 -0.6606 17 1 -0.4850 0.8401 0.0004 18 1 3.1331 -3.4115 -0.3481 19 1 2.9278 -4.3181 1.9206 20 1 1.1160 -4.1683 1.8875 21 1 2.8556 -6.6772 2.5359 22 1 2.9229 -8.2443 1.9339 23 1 0.3196 -4.6852 -0.6675 24 1 1.8207 -5.0368 -1.6315 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337565.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -26.371771 kcal Electronic energy + Delta-G solvation = -11164.368239 eV Core-core repulsion = 8887.009318 eV Total energy + Delta-G solvation = -2277.358921 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.87204 -37.70949 -35.22669 -33.34989 -31.65530 -28.13088 -25.72220 -24.56564 -21.32370 -19.26216 -17.94111 -17.63957 -16.78929 -15.89769 -14.91001 -14.57506 -14.15095 -13.47492 -12.90718 -12.83451 -12.35011 -11.68133 -11.42129 -11.01384 -10.83447 -10.34742 -9.97300 -9.62709 -9.55629 -9.33700 -8.29194 -8.10044 -6.05665 -3.71544 2.91035 3.26530 3.29074 3.32054 3.45596 4.23260 4.37782 5.08386 5.30918 5.41439 5.57003 5.79212 5.86741 6.07928 6.15859 6.33009 6.64585 6.99593 7.27745 7.36930 8.24911 8.31948 8.85073 9.36985 9.98694 11.14183 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.102811 B = 0.008249 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.279943 B = 3393.434826 C = 3480.530113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.027 3.973 3 Si 0.927 3.073 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.372 4.372 8 H 0.067 0.933 9 O -0.270 6.270 10 C 0.072 3.928 11 C 0.076 3.924 12 N -0.659 5.659 13 C 0.729 3.271 14 N -0.868 5.868 15 O -0.605 6.605 16 C 0.125 3.875 17 H 0.261 0.739 18 H 0.079 0.921 19 H 0.071 0.929 20 H 0.090 0.910 21 H 0.396 0.604 22 H 0.411 0.589 23 H 0.089 0.911 24 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -6.832 4.429 9.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.754 3.246 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.451 4.451 8 H 0.084 0.916 9 O -0.183 6.183 10 C 0.011 3.989 11 C -0.047 4.047 12 N -0.400 5.400 13 C 0.431 3.569 14 N -0.436 5.436 15 O -0.485 6.485 16 C 0.002 3.998 17 H 0.071 0.929 18 H 0.097 0.903 19 H 0.089 0.911 20 H 0.108 0.892 21 H 0.223 0.777 22 H 0.242 0.758 23 H 0.107 0.893 24 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.941 -7.284 3.741 9.564 hybrid contribution 0.816 0.659 0.594 1.205 sum 5.757 -6.625 4.335 9.789 Atomic orbital electron populations 1.70004 1.05455 1.26362 1.50921 1.24983 0.95687 0.97859 0.98723 0.86011 0.78550 0.81534 0.78479 1.20268 1.20823 1.20300 1.20870 0.90278 0.82394 1.51512 0.91568 1.85721 1.30866 1.10177 1.91494 1.23665 0.95558 0.87012 0.92682 1.24067 1.01682 0.81620 0.97345 1.48901 1.67682 1.04385 1.19062 1.15376 0.77966 0.80636 0.82957 1.42891 1.73037 1.13247 1.14402 1.90923 1.61813 1.53601 1.42132 1.23356 1.00063 0.85941 0.90454 0.92942 0.90333 0.91066 0.89223 0.77660 0.75794 0.89288 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.67 55.48 0.76 -25.85 14 2 C 0.03 0.75 5.49 -17.51 -0.10 0.65 14 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 14 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 14 7 C -0.37 -10.21 9.85 30.88 0.30 -9.91 14 8 H 0.07 1.69 7.61 -52.49 -0.40 1.29 14 9 O -0.27 -7.14 9.80 -16.49 -0.16 -7.30 14 10 C 0.07 1.46 4.53 -25.80 -0.12 1.34 14 11 C 0.08 1.27 8.30 -2.77 -0.02 1.25 14 12 N -0.66 -11.49 3.62 -184.08 -0.67 -12.16 14 13 C 0.73 12.69 9.03 -86.92 -0.79 11.90 14 14 N -0.87 -10.42 8.88 27.63 0.25 -10.17 14 15 O -0.60 -12.87 17.91 5.29 0.09 -12.78 14 16 C 0.12 2.33 8.67 -2.96 -0.03 2.31 14 17 H 0.26 7.33 8.31 -40.82 -0.34 7.00 14 18 H 0.08 1.53 7.83 -51.93 -0.41 1.12 14 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 14 20 H 0.09 1.54 8.14 -51.93 -0.42 1.12 14 21 H 0.40 3.81 8.44 -40.82 -0.34 3.47 14 22 H 0.41 4.07 8.93 -40.82 -0.36 3.71 14 23 H 0.09 1.69 8.14 -51.93 -0.42 1.27 14 24 H 0.08 1.38 8.14 -51.93 -0.42 0.96 14 LS Contribution 224.32 15.07 3.38 3.38 Total: -1.00 -33.71 224.32 -4.45 -38.16 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -2.34 Total: 3.15 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.74 Total: 7.54 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.34 Total: -48.18 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.07 Total: -20.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -33.71 -4.45 -38.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337565.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.791 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds