Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48493 * 109.46944 * 240.00157 * 3 2 1 5 5 H 1.48499 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46928 * 119.99857 * 3 2 1 7 7 C 1.38642 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99837 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.42898 * 117.00015 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.74250 * 111.26098 * 10 9 7 12 12 N 1.47925 * 85.99684 * 138.00445 * 11 10 9 13 13 C 1.34780 * 134.49772 * 155.35643 * 12 11 10 14 14 N 1.34774 * 120.00188 * 359.97438 * 13 12 11 15 15 O 1.21584 * 119.99378 * 179.97438 * 13 12 11 16 16 C 1.47579 * 91.00789 * 335.35638 * 12 11 10 17 17 H 0.97001 * 119.99948 * 359.97438 * 1 2 3 18 18 H 1.09002 * 112.94238 * 339.66666 * 10 9 7 19 19 H 1.09006 * 113.76402 * 252.36602 * 11 10 9 20 20 H 1.08997 * 113.76968 * 23.75227 * 11 10 9 21 21 H 0.97005 * 119.99957 * 0.02562 * 14 13 12 22 22 H 0.96995 * 120.00092 * 179.97438 * 14 13 12 23 23 H 1.09003 * 113.77049 * 270.34039 * 16 12 11 24 24 H 1.08993 * 113.77081 * 138.93800 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3343 -2.3691 0.0016 10 6 2.1125 -3.5676 0.0015 11 6 2.0225 -4.3652 1.3152 12 7 1.9372 -5.5679 0.4582 13 6 2.2275 -6.8728 0.6301 14 7 2.7143 -7.3051 1.8101 15 8 2.0500 -7.6598 -0.2795 16 6 1.4067 -4.7649 -0.6606 17 1 -0.4850 0.8401 0.0004 18 1 3.1331 -3.4115 -0.3481 19 1 2.9278 -4.3181 1.9206 20 1 1.1160 -4.1683 1.8875 21 1 2.8556 -6.6772 2.5359 22 1 2.9229 -8.2443 1.9339 23 1 0.3196 -4.6852 -0.6675 24 1 1.8207 -5.0368 -1.6315 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260337565.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -53.920799 kcal Electronic energy + Delta-G solvation = -11165.562855 eV Core-core repulsion = 8887.009318 eV Total energy + Delta-G solvation = -2278.553537 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.31237 -39.25913 -37.04262 -34.60689 -33.69275 -29.62860 -27.16707 -26.61339 -22.84023 -20.66252 -19.84177 -18.99941 -18.06924 -17.65833 -16.44660 -16.07355 -15.80897 -15.09815 -14.67045 -14.43261 -13.87524 -13.33583 -13.25237 -12.74075 -12.51740 -12.08968 -11.51192 -11.40436 -11.18360 -10.76529 -10.12816 -9.68911 -8.14308 -5.84292 1.45383 1.52805 1.56008 1.60493 2.07462 2.38594 3.16423 3.21096 3.66537 3.80830 4.04115 4.37331 4.53704 4.62565 4.67848 4.71586 5.08431 5.30208 5.97730 6.09865 6.23878 6.93892 7.29055 7.58481 8.03789 9.09248 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.102811 B = 0.008249 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.279943 B = 3393.434826 C = 3480.530113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.003 2.997 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.378 4.378 8 H 0.082 0.918 9 O -0.310 6.310 10 C 0.057 3.943 11 C 0.095 3.905 12 N -0.658 5.658 13 C 0.725 3.275 14 N -0.840 5.840 15 O -0.647 6.647 16 C 0.124 3.876 17 H 0.260 0.740 18 H 0.087 0.913 19 H 0.107 0.893 20 H 0.085 0.915 21 H 0.412 0.588 22 H 0.424 0.576 23 H 0.079 0.921 24 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -6.809 5.455 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.233 4.233 3 Si 0.826 3.174 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.456 4.456 8 H 0.099 0.901 9 O -0.224 6.224 10 C -0.003 4.003 11 C -0.028 4.028 12 N -0.398 5.398 13 C 0.426 3.574 14 N -0.410 5.410 15 O -0.530 6.530 16 C 0.000 4.000 17 H 0.069 0.931 18 H 0.105 0.895 19 H 0.126 0.874 20 H 0.103 0.897 21 H 0.242 0.758 22 H 0.258 0.742 23 H 0.097 0.903 24 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.668 -7.299 4.821 10.999 hybrid contribution 0.316 0.520 0.283 0.672 sum 6.984 -6.779 5.104 10.990 Atomic orbital electron populations 1.70182 1.07584 1.27319 1.53203 1.26184 0.96648 1.01976 0.98520 0.84845 0.77181 0.76083 0.79298 1.19110 1.20991 1.18597 1.21404 0.91115 0.83058 1.50060 0.90054 1.85657 1.33108 1.11522 1.92104 1.23979 0.95515 0.85394 0.95428 1.23903 1.03195 0.79804 0.95877 1.48793 1.67672 1.04750 1.18628 1.15566 0.78029 0.80018 0.83775 1.42624 1.71049 1.14357 1.12922 1.90900 1.63614 1.54499 1.43995 1.23248 0.99528 0.85859 0.91331 0.93115 0.89513 0.87444 0.89681 0.75786 0.74248 0.90284 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.67 21.61 0.30 -57.09 14 2 C -0.04 -2.22 5.49 84.83 0.47 -1.75 14 3 Si 1.00 42.68 29.55 68.60 2.03 44.71 14 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 14 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 14 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 14 7 C -0.38 -20.61 9.85 67.92 0.67 -19.94 14 8 H 0.08 4.03 7.61 -2.91 -0.02 4.01 14 9 O -0.31 -16.50 9.80 -81.92 -0.80 -17.31 14 10 C 0.06 2.26 4.53 31.26 0.14 2.40 14 11 C 0.09 2.96 8.30 86.42 0.72 3.68 14 12 N -0.66 -21.82 3.62 -858.40 -3.10 -24.93 14 13 C 0.73 23.81 9.03 179.05 1.62 25.43 14 14 N -0.84 -17.62 8.88 -184.75 -1.64 -19.26 14 15 O -0.65 -26.89 17.91 -3.98 -0.07 -26.96 14 16 C 0.12 4.60 8.67 86.49 0.75 5.35 14 17 H 0.26 14.94 8.31 -92.71 -0.77 14.17 14 18 H 0.09 3.25 7.83 -2.39 -0.02 3.23 14 19 H 0.11 2.60 8.14 -2.38 -0.02 2.59 14 20 H 0.09 2.79 8.14 -2.39 -0.02 2.77 14 21 H 0.41 6.36 8.44 -92.70 -0.78 5.58 14 22 H 0.42 7.11 8.93 -92.71 -0.83 6.29 14 23 H 0.08 3.07 8.14 -2.39 -0.02 3.05 14 24 H 0.08 2.95 8.14 -2.39 -0.02 2.93 14 Total: -1.00 -72.73 224.32 0.69 -72.04 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.38 Total: 13.62 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 4.36 Total: 15.17 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.45 Total: -101.27 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.87 Total: -44.27 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.73 0.69 -72.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337565.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.120 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds