Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30459 * 125.73946 * 2 1 4 4 C 1.34285 * 109.41955 * 180.27013 * 3 2 1 5 5 C 1.34739 * 108.27085 * 359.72288 * 4 3 2 6 6 Cl 1.73608 * 126.59038 * 180.02562 * 5 4 3 7 7 N 1.36364 * 125.74022 * 179.79902 * 2 1 3 8 8 C 1.37580 * 126.51395 * 359.97438 * 7 2 1 9 9 H 1.08003 * 120.00153 * 326.24308 * 8 7 2 10 10 C 1.38929 * 120.00140 * 146.24368 * 8 7 2 11 11 N 1.31335 * 120.00097 * 331.63240 * 10 8 7 12 12 Si 1.86808 * 120.00010 * 151.64102 * 10 8 7 13 13 H 1.48501 * 109.46885 * 269.99665 * 12 10 8 14 14 H 1.48495 * 109.47338 * 29.99520 * 12 10 8 15 15 H 1.48494 * 109.47092 * 150.00045 * 12 10 8 16 16 H 1.08993 * 109.47183 * 270.20147 * 1 2 3 17 17 H 1.09004 * 109.46871 * 30.20381 * 1 2 3 18 18 H 1.08996 * 109.46852 * 150.19873 * 1 2 3 19 19 H 1.08005 * 125.86524 * 179.74684 * 4 3 2 20 20 H 0.97002 * 119.99930 * 356.27993 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2690 1.0589 0.0000 4 6 3.5577 0.6816 -0.0060 5 6 3.6036 -0.6650 -0.0037 6 17 5.0320 -1.6518 -0.0086 7 7 2.3035 -1.1068 0.0039 8 6 1.8842 -2.4172 0.0090 9 1 0.9791 -2.6925 0.5301 10 6 2.6249 -3.3862 -0.6562 11 7 3.3492 -3.0568 -1.7011 12 14 2.5905 -5.1577 -0.0645 13 1 3.6726 -5.3684 0.9304 14 1 1.2765 -5.4439 0.5653 15 1 2.7952 -6.0692 -1.2188 16 1 -0.3633 0.0036 1.0276 17 1 -0.3633 0.8882 -0.5170 18 1 -0.3633 -0.8917 -0.5107 19 1 4.4109 1.3438 -0.0113 20 1 3.3250 -2.1487 -2.0412 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362902.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = 19.705881 kcal Electronic energy + Delta-G solvation = -9531.281467 eV Core-core repulsion = 7560.796693 eV Total energy + Delta-G solvation = -1970.484774 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.60876 -37.33969 -36.14506 -32.89625 -32.12715 -27.66567 -26.69203 -22.42720 -21.43351 -19.87176 -17.55180 -16.58459 -15.78938 -15.55597 -15.15638 -14.05053 -13.92891 -13.54307 -13.11065 -13.07819 -12.48778 -12.31808 -12.01327 -11.89612 -11.26052 -10.80677 -10.35914 -9.22094 -8.92818 -6.63320 1.12485 1.20936 1.50522 1.66305 1.76804 2.19498 2.26002 2.75006 3.05416 3.85319 4.47915 4.56575 4.77523 4.93606 5.05669 5.14082 5.64338 5.80645 6.01833 6.67082 7.14344 7.34379 8.07955 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.042073 B = 0.021475 C = 0.015369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.353407 B = 1303.542076 C = 1821.424036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C 0.108 3.892 3 N -0.520 5.520 4 C -0.052 4.052 5 C -0.043 4.043 6 Cl -0.023 7.023 7 N -0.272 5.272 8 C -0.469 4.469 9 H 0.112 0.888 10 C 0.005 3.995 11 N -0.820 5.820 12 Si 1.121 2.879 13 H -0.271 1.271 14 H -0.253 1.253 15 H -0.273 1.273 16 H 0.079 0.921 17 H 0.090 0.910 18 H 0.070 0.930 19 H 0.180 0.820 20 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -1.513 2.751 3.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.148 4.148 3 N -0.241 5.241 4 C -0.207 4.207 5 C -0.190 4.190 6 Cl 0.005 6.995 7 N 0.059 4.941 8 C -0.597 4.597 9 H 0.130 0.870 10 C -0.208 4.208 11 N -0.445 5.445 12 Si 0.938 3.062 13 H -0.196 1.196 14 H -0.176 1.176 15 H -0.198 1.198 16 H 0.098 0.902 17 H 0.109 0.891 18 H 0.088 0.912 19 H 0.197 0.803 20 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.162 -2.420 2.421 3.614 hybrid contribution 0.165 0.838 0.080 0.858 sum -0.997 -1.581 2.500 3.122 Atomic orbital electron populations 1.19927 0.83206 1.03391 1.03116 1.23877 0.96774 0.81207 1.12984 1.70028 1.01498 1.29189 1.23434 1.21927 0.95508 0.90268 1.13008 1.21953 0.82518 0.91789 1.22761 1.98265 1.32442 1.71264 1.97486 1.41761 1.03544 1.07321 1.41462 1.20995 1.16193 0.81577 1.40902 0.87022 1.28077 0.91475 1.09805 0.91482 1.70712 1.35067 1.22282 1.16393 0.82886 0.78733 0.68075 0.76541 1.19587 1.17626 1.19766 0.90234 0.89107 0.91155 0.80313 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.42 10.18 71.24 0.73 -0.70 14 2 C 0.11 5.29 7.91 137.71 1.09 6.37 14 3 N -0.52 -25.79 11.24 -187.04 -2.10 -27.89 14 4 C -0.05 -2.51 11.84 83.51 0.99 -1.53 14 5 C -0.04 -2.20 6.30 83.03 0.52 -1.68 14 6 Cl -0.02 -1.06 26.03 -2.72 -0.07 -1.13 14 7 N -0.27 -14.29 2.65 -330.12 -0.87 -15.16 14 8 C -0.47 -24.12 9.28 83.96 0.78 -23.34 14 9 H 0.11 5.45 7.97 -2.91 -0.02 5.43 14 10 C 0.01 0.26 4.25 84.93 0.36 0.62 14 11 N -0.82 -43.94 11.64 21.65 0.25 -43.69 14 12 Si 1.12 42.87 30.00 68.60 2.06 44.93 14 13 H -0.27 -10.13 7.11 99.48 0.71 -9.43 14 14 H -0.25 -8.60 7.11 99.48 0.71 -7.89 14 15 H -0.27 -10.24 7.11 99.48 0.71 -9.54 14 16 H 0.08 2.63 8.14 -2.39 -0.02 2.61 14 17 H 0.09 2.99 8.14 -2.38 -0.02 2.97 14 18 H 0.07 2.58 7.85 -2.39 -0.02 2.56 14 19 H 0.18 7.42 8.06 -2.91 -0.02 7.39 14 20 H 0.27 15.40 7.24 -92.71 -0.67 14.73 14 Total: -1.00 -59.42 200.06 5.07 -54.35 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.34 Total: 8.84 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.47 Total: -20.25 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.72 Total: -86.74 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.06 Total: 44.93 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -59.42 5.07 -54.35 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362902.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.056 kcal (2) G-P(sol) polarization free energy of solvation -59.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds