Wall clock time and date at job start Mon Mar 30 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 102.99749 * 2 1 4 4 C 1.50707 * 110.01818 * 302.32897 * 3 2 1 5 5 H 1.07996 * 119.99797 * 124.07702 * 4 3 2 6 6 C 1.37875 * 119.99738 * 304.08045 * 4 3 2 7 7 N 1.31513 * 119.99768 * 186.60444 * 6 4 3 8 8 Si 1.86791 * 120.00318 * 6.32762 * 6 4 3 9 9 H 1.48507 * 109.47185 * 93.84409 * 8 6 4 10 10 H 1.48499 * 109.47544 * 213.84521 * 8 6 4 11 11 H 1.48501 * 109.47322 * 333.84535 * 8 6 4 12 12 C 1.53873 * 110.03439 * 63.72167 * 3 2 1 13 13 C 1.54377 * 106.54398 * 119.34757 * 12 3 2 14 14 C 1.54882 * 104.21554 * 23.57488 * 13 12 3 15 15 C 1.54269 * 110.03353 * 180.94001 * 3 2 1 16 16 H 1.09000 * 109.47199 * 304.04401 * 1 2 3 17 17 H 1.08998 * 109.47242 * 64.05085 * 1 2 3 18 18 H 1.09005 * 109.46869 * 184.05255 * 1 2 3 19 19 H 0.96999 * 119.99974 * 179.97438 * 7 6 4 20 20 H 1.09001 * 110.03616 * 238.61528 * 12 3 2 21 21 H 1.09002 * 110.03262 * 0.04947 * 12 3 2 22 22 H 1.09004 * 110.45888 * 264.89276 * 13 12 3 23 23 H 1.09003 * 110.48976 * 142.27224 * 13 12 3 24 24 H 1.09002 * 110.75278 * 203.75919 * 14 13 12 25 25 H 1.08997 * 110.75681 * 80.39658 * 14 13 12 26 26 H 1.09005 * 110.48067 * 335.73418 * 15 3 2 27 27 H 1.09005 * 110.48843 * 98.37408 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.6002 2.4405 -1.1965 5 1 0.9438 3.2870 -1.0593 6 6 1.8693 1.9753 -2.4662 7 7 1.4338 2.6382 -3.5153 8 14 2.8589 0.4080 -2.6965 9 1 1.9342 -0.7468 -2.8266 10 1 3.6859 0.5206 -3.9248 11 1 3.7435 0.2038 -1.5213 12 6 1.7169 2.4251 1.2962 13 6 2.9601 2.9920 2.0148 14 6 3.9976 3.1890 0.8818 15 6 3.7529 1.9565 -0.0238 16 1 -0.3633 0.5753 0.8515 17 1 -0.3633 0.4497 -0.9240 18 1 -0.3633 -1.0252 0.0726 19 1 1.6235 2.3111 -4.4086 20 1 1.0221 3.2310 1.0600 21 1 1.2274 1.6820 1.9257 22 1 3.3312 2.2806 2.7526 23 1 2.7257 3.9458 2.4876 24 1 5.0118 3.1798 1.2810 25 1 3.8040 4.1131 0.3372 26 1 4.2521 1.0778 0.3847 27 1 4.0972 2.1546 -1.0389 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260370416.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:52 Heat of formation + Delta-G solvation = -16.594895 kcal Electronic energy + Delta-G solvation = -10178.792764 eV Core-core repulsion = 8448.151015 eV Total energy + Delta-G solvation = -1730.641749 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.32264 -32.58945 -29.06354 -28.41861 -27.30465 -23.95999 -20.19138 -19.06826 -16.91717 -15.22371 -15.15824 -14.14798 -13.55038 -12.97688 -12.64250 -12.38921 -12.31668 -12.19453 -11.02169 -10.85400 -10.50355 -10.35930 -10.24916 -9.97064 -9.75807 -9.65007 -9.43147 -8.72859 -8.36051 -6.44145 -6.19047 -4.21697 2.96142 3.41259 3.57134 3.71017 3.88050 4.53068 5.23248 5.47210 5.53822 5.65745 6.00523 6.08052 6.24040 6.30300 6.37126 6.49464 6.59471 6.62555 6.67210 6.77640 6.85685 7.03747 7.16402 7.57982 8.31732 8.75897 9.40746 10.85312 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.023265 C = 0.019327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.229897 B = 1203.237688 C = 1448.438668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 S -0.376 6.376 3 C 0.106 3.894 4 C -0.502 4.502 5 H 0.079 0.921 6 C 0.085 3.915 7 N -0.879 5.879 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.304 1.304 11 H -0.237 1.237 12 C -0.104 4.104 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.094 4.094 16 H 0.062 0.938 17 H 0.079 0.921 18 H 0.073 0.927 19 H 0.268 0.732 20 H 0.064 0.936 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -1.601 7.295 7.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 S -0.145 6.145 3 C 0.000 4.000 4 C -0.543 4.543 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.514 5.514 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.233 1.233 11 H -0.161 1.161 12 C -0.144 4.144 13 C -0.157 4.157 14 C -0.153 4.153 15 C -0.135 4.135 16 H 0.081 0.919 17 H 0.098 0.902 18 H 0.091 0.909 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.596 -2.546 7.142 8.014 hybrid contribution -0.524 0.115 -0.347 0.639 sum 2.072 -2.431 6.795 7.508 Atomic orbital electron populations 1.22987 0.95120 1.03167 1.04869 1.86445 1.07989 1.23974 1.96050 1.21308 0.94928 0.86753 0.97046 1.21010 1.29383 1.15497 0.88448 0.90297 1.25139 0.94389 0.97253 0.95463 1.69948 1.44363 1.38477 0.98627 0.86461 0.81277 0.83180 0.77684 1.20388 1.23311 1.16134 1.22481 0.97123 0.99377 0.95375 1.22310 0.96508 0.99505 0.97384 1.22408 0.97248 0.99185 0.96430 1.22588 0.95336 0.95985 0.99545 0.91863 0.90242 0.90861 0.92291 0.91742 0.92838 0.92557 0.92695 0.92859 0.91193 0.93356 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 10.15 101.05 1.03 -0.86 15 2 S -0.38 -8.67 15.87 -107.50 -1.71 -10.38 15 3 C 0.11 2.44 0.49 -90.65 -0.04 2.40 15 4 C -0.50 -13.51 7.94 -34.44 -0.27 -13.78 15 5 H 0.08 2.30 7.57 -52.49 -0.40 1.90 15 6 C 0.09 2.40 5.27 -17.82 -0.09 2.31 15 7 N -0.88 -26.11 13.96 55.43 0.77 -25.34 15 8 Si 0.88 22.60 23.11 -169.99 -3.93 18.67 15 9 H -0.28 -7.28 7.11 56.52 0.40 -6.88 15 10 H -0.30 -7.80 7.11 56.52 0.40 -7.40 15 11 H -0.24 -5.81 4.55 56.52 0.26 -5.56 15 12 C -0.10 -2.09 5.81 -25.55 -0.15 -2.23 15 13 C -0.12 -2.05 6.83 -25.02 -0.17 -2.22 15 14 C -0.11 -2.08 6.91 -24.75 -0.17 -2.25 15 15 C -0.09 -2.05 4.11 -25.07 -0.10 -2.15 15 16 H 0.06 1.17 7.38 -51.92 -0.38 0.79 15 17 H 0.08 1.76 7.91 -51.93 -0.41 1.35 15 18 H 0.07 1.30 8.14 -51.92 -0.42 0.87 15 19 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 20 H 0.06 1.32 7.37 -51.93 -0.38 0.94 15 21 H 0.05 1.02 6.94 -51.93 -0.36 0.66 15 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.05 1.03 7.62 -51.93 -0.40 0.63 15 27 H 0.07 1.59 5.87 -51.93 -0.30 1.28 15 LS Contribution 218.88 15.07 3.30 3.30 Total: -1.00 -28.98 218.88 -5.57 -34.55 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.03 Total: -2.02 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 0.02 Total: -18.78 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.77 Total: -25.34 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -3.93 Total: 18.67 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.71 Total: -10.38 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.98 -5.57 -34.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260370416.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.953 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds