Wall clock time and date at job start Mon Mar 30 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47246 * 125.82545 * 2 1 4 4 C 1.54162 * 103.28235 * 180.22457 * 3 2 1 5 5 N 1.46939 * 104.03082 * 359.78607 * 4 3 2 6 6 C 1.29322 * 110.10421 * 359.97438 * 5 4 3 7 7 S 1.76199 * 122.88664 * 179.97438 * 6 5 4 8 8 C 1.76195 * 99.99986 * 0.02562 * 7 6 5 9 9 H 1.08001 * 119.99996 * 0.02562 * 8 7 6 10 10 C 1.38803 * 120.00155 * 179.97438 * 8 7 6 11 11 N 1.31533 * 119.99814 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00168 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47074 * 90.00565 * 12 10 8 14 14 H 1.48505 * 109.46750 * 210.00411 * 12 10 8 15 15 H 1.48505 * 109.46914 * 330.00015 * 12 10 8 16 16 H 1.08993 * 109.47355 * 180.17874 * 1 2 3 17 17 H 1.09003 * 109.46811 * 300.17394 * 1 2 3 18 18 H 1.09001 * 109.46979 * 60.17569 * 1 2 3 19 19 H 1.09007 * 110.84132 * 61.69379 * 3 2 1 20 20 H 1.08993 * 110.47434 * 298.59287 * 3 2 1 21 21 H 1.09003 * 110.51908 * 241.14920 * 4 3 2 22 22 H 1.09003 * 110.63409 * 118.48460 * 4 3 2 23 23 H 0.96998 * 120.00446 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3268 1.1939 0.0000 4 6 3.7506 0.6029 -0.0059 5 7 3.5332 -0.8503 -0.0032 6 6 2.2663 -1.1102 0.0035 7 16 1.6265 -2.7519 0.0078 8 6 3.1321 -3.6671 0.0015 9 1 4.0793 -3.1484 -0.0030 10 6 3.1007 -5.0548 0.0033 11 7 1.9471 -5.6866 0.0092 12 14 4.6970 -6.0251 -0.0027 13 1 5.1262 -6.2807 1.3957 14 1 4.4869 -7.3191 -0.7004 15 1 5.7466 -5.2469 -0.7085 16 1 -0.3634 -1.0276 0.0032 17 1 -0.3633 0.5166 0.8885 18 1 -0.3633 0.5111 -0.8916 19 1 2.1622 1.7911 0.8969 20 1 2.1538 1.7890 -0.8966 21 1 4.2952 0.9093 0.8873 22 1 4.2891 0.9070 -0.9035 23 1 1.9251 -6.6563 0.0101 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260387274.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:56 Heat of formation + Delta-G solvation = 29.858006 kcal Electronic energy + Delta-G solvation = -9293.828976 eV Core-core repulsion = 7461.661232 eV Total energy + Delta-G solvation = -1832.167744 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.93157 -32.66345 -32.31742 -29.27586 -25.90548 -25.50184 -21.61261 -20.29363 -17.63623 -15.90640 -15.55117 -14.79648 -14.09870 -13.60593 -13.14887 -12.76650 -11.94158 -11.69765 -11.60096 -11.09929 -11.03699 -10.84103 -10.77269 -10.00296 -9.10270 -8.90122 -8.68242 -7.37067 -6.69462 -6.31805 -4.05706 2.87764 3.22517 3.30396 3.36182 3.40267 3.93700 4.14378 5.03591 5.11237 5.30974 5.42494 5.50187 5.69713 5.81859 6.04012 6.12116 6.36229 6.49815 7.07381 7.72847 7.98503 8.56696 8.79003 9.20845 10.77149 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.063901 B = 0.012618 C = 0.010641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.070002 B = 2218.489814 C = 2630.660729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.645 5.645 3 C 0.086 3.914 4 C 0.028 3.972 5 N -0.587 5.587 6 C 0.337 3.663 7 S 0.084 5.916 8 C -0.522 4.522 9 H 0.105 0.895 10 C 0.071 3.929 11 N -0.881 5.881 12 Si 0.929 3.071 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.268 1.268 16 H 0.083 0.917 17 H 0.048 0.952 18 H 0.048 0.952 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 8.850 -0.009 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.372 5.372 3 C -0.041 4.041 4 C -0.105 4.105 5 N -0.322 5.322 6 C -0.044 4.044 7 S 0.317 5.683 8 C -0.671 4.671 9 H 0.123 0.877 10 C -0.137 4.137 11 N -0.517 5.517 12 Si 0.755 3.245 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.192 1.192 16 H 0.101 0.899 17 H 0.067 0.933 18 H 0.067 0.933 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.544 7.912 -0.013 8.311 hybrid contribution 1.471 0.624 0.008 1.598 sum -1.073 8.536 -0.005 8.604 Atomic orbital electron populations 1.21329 0.78366 1.03235 1.00025 1.47936 1.05012 1.03665 1.80606 1.22445 0.92562 0.88770 1.00290 1.22965 0.94390 0.92019 1.01079 1.74903 1.12728 1.09994 1.34531 1.26328 0.90106 0.96230 0.91692 1.83432 1.12665 0.84559 1.87681 1.23252 0.93564 0.92633 1.57607 0.87671 1.25079 0.97955 0.96636 0.94003 1.69930 1.24689 1.09371 1.47725 0.85982 0.81678 0.78343 0.78484 1.20166 1.20883 1.19245 0.89869 0.93337 0.93316 0.92238 0.92259 0.91298 0.91274 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 11.23 59.85 0.67 2.40 14 2 N -0.65 -12.39 3.45 -181.57 -0.63 -13.02 14 3 C 0.09 1.40 7.76 -3.03 -0.02 1.38 14 4 C 0.03 0.53 8.04 -3.20 -0.03 0.51 14 5 N -0.59 -14.31 10.06 -60.47 -0.61 -14.92 14 6 C 0.34 7.97 7.82 -89.60 -0.70 7.27 14 7 S 0.08 2.19 20.47 -107.50 -2.20 -0.01 14 8 C -0.52 -15.14 9.31 30.94 0.29 -14.86 14 9 H 0.11 3.15 6.74 -52.49 -0.35 2.79 14 10 C 0.07 2.01 5.49 -17.47 -0.10 1.92 14 11 N -0.88 -25.44 13.22 55.49 0.73 -24.71 14 12 Si 0.93 21.90 29.55 -169.99 -5.02 16.88 14 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 14 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 16 H 0.08 1.33 6.85 -51.93 -0.36 0.98 14 17 H 0.05 0.63 8.14 -51.93 -0.42 0.21 14 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 14 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 14 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 14 21 H 0.07 1.19 8.14 -51.93 -0.42 0.77 14 22 H 0.07 1.20 8.14 -51.93 -0.42 0.77 14 23 H 0.27 7.28 8.31 -40.82 -0.34 6.94 14 LS Contribution 218.48 15.07 3.29 3.29 Total: -1.00 -31.58 218.48 -6.70 -38.28 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -2.38 Total: -4.42 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.11 Total: -1.37 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.50 Total: -52.64 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.20 Total: -0.01 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.58 -6.70 -38.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387274.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.138 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds