Wall clock time and date at job start Mon Mar 30 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47246 * 125.82545 * 2 1 4 4 C 1.54162 * 103.28235 * 180.22457 * 3 2 1 5 5 N 1.46939 * 104.03082 * 359.78607 * 4 3 2 6 6 C 1.29322 * 110.10421 * 359.97438 * 5 4 3 7 7 S 1.76199 * 122.88664 * 179.97438 * 6 5 4 8 8 C 1.76195 * 99.99986 * 0.02562 * 7 6 5 9 9 H 1.08001 * 119.99996 * 0.02562 * 8 7 6 10 10 C 1.38803 * 120.00155 * 179.97438 * 8 7 6 11 11 N 1.31533 * 119.99814 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00168 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47074 * 90.00565 * 12 10 8 14 14 H 1.48505 * 109.46750 * 210.00411 * 12 10 8 15 15 H 1.48505 * 109.46914 * 330.00015 * 12 10 8 16 16 H 1.08993 * 109.47355 * 180.17874 * 1 2 3 17 17 H 1.09003 * 109.46811 * 300.17394 * 1 2 3 18 18 H 1.09001 * 109.46979 * 60.17569 * 1 2 3 19 19 H 1.09007 * 110.84132 * 61.69379 * 3 2 1 20 20 H 1.08993 * 110.47434 * 298.59287 * 3 2 1 21 21 H 1.09003 * 110.51908 * 241.14920 * 4 3 2 22 22 H 1.09003 * 110.63409 * 118.48460 * 4 3 2 23 23 H 0.96998 * 120.00446 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3268 1.1939 0.0000 4 6 3.7506 0.6029 -0.0059 5 7 3.5332 -0.8503 -0.0032 6 6 2.2663 -1.1102 0.0035 7 16 1.6265 -2.7519 0.0078 8 6 3.1321 -3.6671 0.0015 9 1 4.0793 -3.1484 -0.0030 10 6 3.1007 -5.0548 0.0033 11 7 1.9471 -5.6866 0.0092 12 14 4.6970 -6.0251 -0.0027 13 1 5.1262 -6.2807 1.3957 14 1 4.4869 -7.3191 -0.7004 15 1 5.7466 -5.2469 -0.7085 16 1 -0.3634 -1.0276 0.0032 17 1 -0.3633 0.5166 0.8885 18 1 -0.3633 0.5111 -0.8916 19 1 2.1622 1.7911 0.8969 20 1 2.1538 1.7890 -0.8966 21 1 4.2952 0.9093 0.8873 22 1 4.2891 0.9070 -0.9035 23 1 1.9251 -6.6563 0.0101 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260387274.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:56 Heat of formation + Delta-G solvation = 7.610459 kcal Electronic energy + Delta-G solvation = -9294.793702 eV Core-core repulsion = 7461.661232 eV Total energy + Delta-G solvation = -1833.132470 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.48773 -34.70088 -33.91507 -30.77446 -27.66317 -27.25735 -23.06307 -22.00823 -19.61033 -17.51633 -16.93604 -16.89081 -15.65995 -15.34957 -14.59377 -14.38129 -13.39391 -13.20175 -13.09635 -12.99573 -12.85587 -12.70202 -12.29278 -11.88555 -11.14264 -10.77946 -10.52264 -9.04132 -8.55472 -8.43536 -6.22390 1.06203 1.39432 1.39987 1.55560 1.60058 2.18991 2.51041 2.96510 3.16884 3.76588 4.19097 4.19430 4.48550 4.68296 4.68564 4.89539 4.97386 5.02506 5.55935 5.66822 6.33686 6.46347 7.04511 7.12875 8.66325 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.063901 B = 0.012618 C = 0.010641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.070002 B = 2218.489814 C = 2630.660729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.021 3.979 5 N -0.634 5.634 6 C 0.334 3.666 7 S 0.053 5.947 8 C -0.549 4.549 9 H 0.087 0.913 10 C 0.026 3.974 11 N -0.908 5.908 12 Si 0.995 3.005 13 H -0.267 1.267 14 H -0.268 1.268 15 H -0.271 1.271 16 H 0.066 0.934 17 H 0.076 0.924 18 H 0.076 0.924 19 H 0.087 0.913 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 10.010 0.008 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.373 5.373 3 C -0.036 4.036 4 C -0.111 4.111 5 N -0.370 5.370 6 C -0.049 4.049 7 S 0.286 5.714 8 C -0.697 4.697 9 H 0.105 0.895 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.817 3.183 13 H -0.192 1.192 14 H -0.193 1.193 15 H -0.196 1.196 16 H 0.085 0.915 17 H 0.094 0.906 18 H 0.094 0.906 19 H 0.105 0.895 20 H 0.105 0.895 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.456 9.103 0.006 9.429 hybrid contribution 1.415 0.414 0.002 1.474 sum -1.041 9.517 0.008 9.574 Atomic orbital electron populations 1.21586 0.76164 1.03077 1.02672 1.48220 1.06479 1.03110 1.79469 1.22635 0.90120 0.87853 1.02950 1.23139 0.96540 0.89239 1.02211 1.74799 1.13584 1.13971 1.34625 1.25924 0.90841 0.96053 0.92062 1.83170 1.12285 0.86907 1.89076 1.23385 0.93981 0.93671 1.58670 0.89456 1.25965 1.01426 0.97317 0.93217 1.70003 1.26528 1.09958 1.47952 0.85006 0.77282 0.77131 0.78895 1.19215 1.19265 1.19563 0.91477 0.90597 0.90592 0.89480 0.89523 0.90152 0.90158 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.98 11.23 127.77 1.43 4.42 14 2 N -0.65 -23.42 3.45 -728.36 -2.51 -25.94 14 3 C 0.09 2.62 7.76 86.63 0.67 3.29 14 4 C 0.02 0.75 8.04 86.69 0.70 1.45 14 5 N -0.63 -30.77 10.06 -345.22 -3.47 -34.25 14 6 C 0.33 15.70 7.82 179.99 1.41 17.11 14 7 S 0.05 2.81 20.47 -56.49 -1.16 1.65 14 8 C -0.55 -32.53 9.31 67.96 0.63 -31.89 14 9 H 0.09 5.37 6.74 -2.91 -0.02 5.35 14 10 C 0.03 1.48 5.49 84.87 0.47 1.95 14 11 N -0.91 -52.83 13.22 21.64 0.29 -52.54 14 12 Si 0.99 45.00 29.55 68.60 2.03 47.03 14 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 14 14 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 15 H -0.27 -12.26 7.11 99.48 0.71 -11.56 14 16 H 0.07 2.09 6.85 -2.39 -0.02 2.08 14 17 H 0.08 1.71 8.14 -2.39 -0.02 1.69 14 18 H 0.08 1.72 8.14 -2.39 -0.02 1.70 14 19 H 0.09 2.10 8.14 -2.38 -0.02 2.08 14 20 H 0.09 2.10 8.14 -2.39 -0.02 2.08 14 21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 14 22 H 0.08 2.62 8.14 -2.39 -0.02 2.60 14 23 H 0.28 14.89 8.31 -92.71 -0.77 14.12 14 Total: -1.00 -68.22 218.48 1.68 -66.54 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 1.20 Total: 1.17 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.31 Total: -3.67 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -5.70 Total: -112.73 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.16 Total: 1.65 kcal Total: -68.22 1.68 -66.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387274.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.153 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds