Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86793 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47352 * 270.00165 * 3 2 1 5 5 H 1.48503 * 109.47321 * 30.00435 * 3 2 1 6 6 H 1.48499 * 109.47059 * 150.00190 * 3 2 1 7 7 C 1.38633 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99856 * 179.97438 * 7 2 1 9 9 O 1.34930 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.42902 * 117.00036 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47112 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47376 * 179.97438 * 12 11 10 14 14 C 1.54033 * 113.92511 * 86.59699 * 13 12 11 15 15 O 1.44180 * 85.51695 * 136.81940 * 14 13 12 16 16 C 1.44178 * 93.33776 * 335.80740 * 15 14 13 17 17 H 0.97003 * 119.99651 * 359.97438 * 1 2 3 18 18 H 1.08998 * 109.47101 * 59.99433 * 10 9 7 19 19 H 1.09001 * 109.46799 * 299.99902 * 10 9 7 20 20 H 1.08998 * 109.47494 * 59.99861 * 11 10 9 21 21 H 1.09003 * 109.46984 * 299.99401 * 11 10 9 22 22 H 1.09002 * 109.47521 * 59.99820 * 12 11 10 23 23 H 1.08999 * 109.47210 * 300.00014 * 12 11 10 24 24 H 1.09002 * 112.99937 * 314.66561 * 13 12 11 25 25 H 1.08997 * 113.86582 * 250.96654 * 14 13 12 26 26 H 1.09004 * 113.86499 * 22.67175 * 14 13 12 27 27 H 1.09003 * 113.86222 * 270.03964 * 16 15 14 28 28 H 1.09000 * 113.98005 * 138.36086 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4474 2.6526 0.7001 6 1 3.5474 1.4400 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3343 -2.3691 -0.0016 10 6 2.1125 -3.5676 -0.0027 11 6 1.1805 -4.7809 -0.0031 12 6 2.0137 -6.0641 -0.0036 13 6 1.0816 -7.2775 -0.0034 14 6 0.6343 -7.7217 -1.4088 15 8 0.8822 -9.0626 -0.9403 16 6 1.8189 -8.6281 0.0660 17 1 -0.4850 0.8401 0.0004 18 1 2.7414 -3.5933 0.8872 19 1 2.7413 -3.5917 -0.8927 20 1 0.5513 -4.7555 -0.8928 21 1 0.5520 -4.7566 0.8872 22 1 2.6426 -6.0894 0.8863 23 1 2.6425 -6.0887 -0.8936 24 1 0.2631 -7.1856 0.7106 25 1 -0.4145 -7.5164 -1.6232 26 1 1.3048 -7.4023 -2.2066 27 1 2.8512 -8.5855 -0.2815 28 1 1.7115 -9.1406 1.0219 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260423262.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = -63.500793 kcal Electronic energy + Delta-G solvation = -11065.313169 eV Core-core repulsion = 8889.884556 eV Total energy + Delta-G solvation = -2175.428613 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.34485 -36.46199 -33.93759 -31.61351 -29.21353 -26.55078 -25.17418 -23.67227 -20.83787 -20.08101 -17.45117 -16.43526 -15.84891 -15.66742 -14.93385 -14.81294 -13.92012 -13.11793 -12.89150 -12.73214 -12.35060 -11.69805 -11.34400 -11.11550 -10.88145 -10.71725 -10.41542 -10.29979 -9.98396 -9.64659 -9.42745 -9.13060 -7.94866 -5.93680 -3.57379 3.31678 3.34025 3.38251 3.68778 4.20519 4.33738 4.76704 5.11597 5.26242 5.29442 5.37693 5.43787 5.45064 5.60964 5.89293 5.95571 6.08011 6.12952 6.16485 6.23796 6.38542 6.68587 6.83206 6.84421 7.49024 8.44729 9.49800 10.19808 11.27718 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.122938 B = 0.006205 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 227.702014 B = 4511.135210 C = 4623.297132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.021 3.979 3 Si 0.926 3.074 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.360 4.360 8 H 0.062 0.938 9 O -0.299 6.299 10 C 0.073 3.927 11 C -0.113 4.113 12 C -0.113 4.113 13 C -0.152 4.152 14 C 0.037 3.963 15 O -0.389 6.389 16 C 0.036 3.964 17 H 0.258 0.742 18 H 0.020 0.980 19 H 0.020 0.980 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 -12.591 -0.234 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.753 3.247 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.440 4.440 8 H 0.079 0.921 9 O -0.214 6.214 10 C -0.005 4.005 11 C -0.151 4.151 12 C -0.151 4.151 13 C -0.171 4.171 14 C -0.039 4.039 15 O -0.308 6.308 16 C -0.041 4.041 17 H 0.068 0.932 18 H 0.038 0.962 19 H 0.038 0.962 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.415 -12.741 -0.306 13.194 hybrid contribution 0.797 1.025 0.060 1.300 sum 4.213 -11.715 -0.246 12.452 Atomic orbital electron populations 1.70027 1.05411 1.25873 1.51987 1.24969 0.95687 0.97772 0.99262 0.85959 0.78657 0.82047 0.78056 1.20708 1.20870 1.20074 1.20817 0.90165 0.82826 1.50162 0.92075 1.85619 1.31943 1.10521 1.93306 1.22094 0.93337 0.87418 0.97642 1.21418 0.98500 0.92363 1.02802 1.21562 0.97738 0.93504 1.02279 1.24346 0.99464 0.95063 0.98178 1.24072 1.02225 0.81344 0.96275 1.89640 1.60788 1.27281 1.53051 1.24010 0.93958 0.93432 0.92724 0.93238 0.96188 0.96203 0.91651 0.91622 0.91467 0.91691 0.87871 0.89121 0.89995 0.90239 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.38 13.67 55.48 0.76 -27.62 15 2 C 0.02 0.63 5.49 -17.51 -0.10 0.54 15 3 Si 0.93 22.34 29.55 -169.99 -5.02 17.32 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.36 -10.88 9.89 30.88 0.31 -10.57 15 8 H 0.06 1.73 7.77 -52.49 -0.41 1.32 15 9 O -0.30 -8.81 9.78 -16.51 -0.16 -8.97 15 10 C 0.07 1.62 6.02 37.15 0.22 1.85 15 11 C -0.11 -2.00 5.58 -26.74 -0.15 -2.15 15 12 C -0.11 -1.49 5.07 -26.73 -0.14 -1.63 15 13 C -0.15 -1.79 3.88 -89.54 -0.35 -2.14 15 14 C 0.04 0.44 8.78 37.61 0.33 0.77 15 15 O -0.39 -5.21 12.45 -35.23 -0.44 -5.65 15 16 C 0.04 0.38 8.79 37.61 0.33 0.71 15 17 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 18 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 19 H 0.02 0.43 8.14 -51.93 -0.42 0.00 15 20 H 0.06 1.18 8.14 -51.93 -0.42 0.75 15 21 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.81 7.88 -51.93 -0.41 0.40 15 24 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.08 0.90 7.93 -51.93 -0.41 0.49 15 27 H 0.08 0.75 8.10 -51.93 -0.42 0.33 15 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 245.39 15.07 3.70 3.70 Total: -1.00 -33.95 245.39 -4.87 -38.82 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -4.17 Total: -4.97 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 0.46 Total: -12.62 kcal Atomic # 7 Polarization: -28.38 SS G_CDS: 0.76 Total: -27.62 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.60 Total: -14.63 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.95 -4.87 -38.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423262.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.683 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds