Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86793 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47352 * 270.00165 * 3 2 1 5 5 H 1.48503 * 109.47321 * 30.00435 * 3 2 1 6 6 H 1.48499 * 109.47059 * 150.00190 * 3 2 1 7 7 C 1.38633 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99856 * 179.97438 * 7 2 1 9 9 O 1.34930 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.42902 * 117.00036 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47112 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47376 * 179.97438 * 12 11 10 14 14 C 1.54033 * 113.92511 * 86.59699 * 13 12 11 15 15 O 1.44180 * 85.51695 * 136.81940 * 14 13 12 16 16 C 1.44178 * 93.33776 * 335.80740 * 15 14 13 17 17 H 0.97003 * 119.99651 * 359.97438 * 1 2 3 18 18 H 1.08998 * 109.47101 * 59.99433 * 10 9 7 19 19 H 1.09001 * 109.46799 * 299.99902 * 10 9 7 20 20 H 1.08998 * 109.47494 * 59.99861 * 11 10 9 21 21 H 1.09003 * 109.46984 * 299.99401 * 11 10 9 22 22 H 1.09002 * 109.47521 * 59.99820 * 12 11 10 23 23 H 1.08999 * 109.47210 * 300.00014 * 12 11 10 24 24 H 1.09002 * 112.99937 * 314.66561 * 13 12 11 25 25 H 1.08997 * 113.86582 * 250.96654 * 14 13 12 26 26 H 1.09004 * 113.86499 * 22.67175 * 14 13 12 27 27 H 1.09003 * 113.86222 * 270.03964 * 16 15 14 28 28 H 1.09000 * 113.98005 * 138.36086 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4474 2.6526 0.7001 6 1 3.5474 1.4400 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3343 -2.3691 -0.0016 10 6 2.1125 -3.5676 -0.0027 11 6 1.1805 -4.7809 -0.0031 12 6 2.0137 -6.0641 -0.0036 13 6 1.0816 -7.2775 -0.0034 14 6 0.6343 -7.7217 -1.4088 15 8 0.8822 -9.0626 -0.9403 16 6 1.8189 -8.6281 0.0660 17 1 -0.4850 0.8401 0.0004 18 1 2.7414 -3.5933 0.8872 19 1 2.7413 -3.5917 -0.8927 20 1 0.5513 -4.7555 -0.8928 21 1 0.5520 -4.7566 0.8872 22 1 2.6426 -6.0894 0.8863 23 1 2.6425 -6.0887 -0.8936 24 1 0.2631 -7.1856 0.7106 25 1 -0.4145 -7.5164 -1.6232 26 1 1.3048 -7.4023 -2.2066 27 1 2.8512 -8.5855 -0.2815 28 1 1.7115 -9.1406 1.0219 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423262.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = -87.617199 kcal Electronic energy + Delta-G solvation = -11066.358935 eV Core-core repulsion = 8889.884556 eV Total energy + Delta-G solvation = -2176.474379 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.28002 -38.46133 -35.38313 -33.75007 -30.55332 -27.42291 -27.03477 -25.39701 -22.33960 -21.01490 -19.63226 -17.47462 -17.35664 -16.85250 -16.37646 -16.29235 -15.78617 -14.82940 -14.51754 -13.83163 -13.53550 -13.30943 -12.98887 -12.78381 -12.50756 -12.09525 -12.06671 -11.51884 -11.30891 -11.25663 -11.17944 -10.59454 -10.16575 -8.19649 -5.90149 1.39242 1.46329 1.55605 2.32568 2.79849 3.13233 3.26141 3.63414 4.05473 4.10978 4.26439 4.31668 4.45257 4.61735 4.63391 4.65493 4.80433 4.84719 4.98656 5.09965 5.17308 5.20398 5.25208 5.34565 5.43535 6.19538 7.23099 8.04961 9.05588 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.122938 B = 0.006205 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 227.702014 B = 4511.135210 C = 4623.297132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.045 4.045 3 Si 1.009 2.991 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.383 4.383 8 H 0.073 0.927 9 O -0.343 6.343 10 C 0.064 3.936 11 C -0.105 4.105 12 C -0.100 4.100 13 C -0.151 4.151 14 C 0.033 3.967 15 O -0.413 6.413 16 C 0.040 3.960 17 H 0.261 0.739 18 H 0.027 0.973 19 H 0.027 0.973 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 -12.692 -0.150 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.238 4.238 3 Si 0.830 3.170 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.090 0.910 9 O -0.260 6.260 10 C -0.013 4.013 11 C -0.142 4.142 12 C -0.137 4.137 13 C -0.170 4.170 14 C -0.044 4.044 15 O -0.332 6.332 16 C -0.036 4.036 17 H 0.070 0.930 18 H 0.045 0.955 19 H 0.046 0.954 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.903 -12.875 -0.222 13.779 hybrid contribution 0.343 0.968 0.035 1.028 sum 5.246 -11.907 -0.187 13.013 Atomic orbital electron populations 1.70202 1.07659 1.27328 1.53310 1.26308 0.96835 1.02225 0.98400 0.84716 0.77603 0.75927 0.78722 1.19426 1.20253 1.18225 1.21373 0.90917 0.83679 1.50176 0.90952 1.85553 1.34584 1.12224 1.93601 1.22456 0.94247 0.86472 0.98138 1.21389 0.98184 0.92692 1.01957 1.21467 0.97464 0.91409 1.03407 1.24304 0.99419 0.95006 0.98230 1.24200 1.02727 0.80842 0.96599 1.89622 1.61659 1.28059 1.53878 1.24185 0.94215 0.92153 0.93022 0.92986 0.95470 0.95436 0.92482 0.92565 0.90272 0.90618 0.88080 0.88933 0.89131 0.88660 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.92 13.67 21.61 0.30 -60.63 15 2 C -0.04 -2.69 5.49 84.82 0.47 -2.22 15 3 Si 1.01 45.47 29.55 68.60 2.03 47.49 15 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.38 -23.24 9.89 67.91 0.67 -22.57 15 8 H 0.07 4.06 7.77 -2.91 -0.02 4.04 15 9 O -0.34 -20.64 9.78 -81.99 -0.80 -21.45 15 10 C 0.06 2.83 6.02 71.98 0.43 3.26 15 11 C -0.10 -3.66 5.58 30.59 0.17 -3.49 15 12 C -0.10 -2.44 5.07 30.59 0.15 -2.28 15 13 C -0.15 -3.28 3.88 -10.10 -0.04 -3.32 15 14 C 0.03 0.73 8.78 72.27 0.63 1.36 15 15 O -0.41 -10.37 12.45 -148.98 -1.86 -12.23 15 16 C 0.04 0.76 8.79 72.27 0.63 1.40 15 17 H 0.26 15.67 8.31 -92.71 -0.77 14.90 15 18 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 19 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.08 1.71 7.88 -2.39 -0.02 1.69 15 24 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.09 1.84 7.93 -2.39 -0.02 1.82 15 27 H 0.10 1.50 8.10 -2.39 -0.02 1.48 15 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -73.09 245.39 3.91 -69.18 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.12 Total: 5.47 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 3.13 Total: -27.85 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.30 Total: -60.63 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -2.66 Total: -33.67 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.09 3.91 -69.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423262.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.433 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds