Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46940 * 2 1 4 4 C 1.52998 * 113.54099 * 314.24771 * 3 2 1 5 5 O 1.42901 * 109.47607 * 175.42210 * 4 3 2 6 6 C 1.34925 * 116.99847 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00420 * 0.02562 * 6 5 4 8 8 C 1.38639 * 119.99568 * 179.97438 * 6 5 4 9 9 N 1.31583 * 119.99992 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47083 * 90.00203 * 10 8 6 12 12 H 1.48501 * 109.47239 * 210.00037 * 10 8 6 13 13 H 1.48494 * 109.47092 * 330.00141 * 10 8 6 14 14 C 1.53367 * 114.56478 * 180.02562 * 3 2 1 15 15 O 1.43355 * 88.44795 * 220.42142 * 14 3 2 16 16 C 1.43354 * 88.31830 * 28.15101 * 15 14 3 17 17 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.46632 * 299.99440 * 1 2 3 19 19 H 1.09001 * 109.47437 * 59.99865 * 1 2 3 20 20 H 1.09006 * 109.46518 * 240.00382 * 2 1 3 21 21 H 1.08999 * 109.47523 * 120.00679 * 2 1 3 22 22 H 1.09005 * 109.46879 * 295.42240 * 4 3 2 23 23 H 1.09001 * 109.47072 * 55.41585 * 4 3 2 24 24 H 0.96998 * 119.99925 * 179.97438 * 9 8 6 25 25 H 1.09006 * 113.39116 * 105.52823 * 14 3 2 26 26 H 1.08992 * 113.39243 * 335.31844 * 14 3 2 27 27 H 1.08998 * 113.38952 * 86.74569 * 16 15 14 28 28 H 1.09001 * 113.39148 * 216.94625 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3209 2.3448 -1.0048 5 8 1.7876 3.6875 -0.8584 6 6 1.2491 4.6157 -1.6763 7 1 0.5002 4.3289 -2.3997 8 6 1.6563 5.9380 -1.5872 9 7 2.5683 6.2875 -0.7054 10 14 0.9113 7.2230 -2.7199 11 1 -0.2925 7.8101 -2.0785 12 1 1.9075 8.2940 -2.9765 13 1 0.5267 6.5866 -4.0053 14 6 3.5676 1.5787 -0.0006 15 8 3.4324 2.6617 0.9288 16 6 2.2199 2.0552 1.3944 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3632 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8899 22 1 1.5263 1.9971 -2.0172 23 1 0.2472 2.3111 -0.8199 24 1 2.8534 7.2126 -0.6434 25 1 3.9744 1.8840 -0.9647 26 1 4.0795 0.7117 0.4167 27 1 2.3800 1.3125 2.1760 28 1 1.4459 2.7779 1.6527 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260435017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = -47.612496 kcal Electronic energy + Delta-G solvation = -11928.649872 eV Core-core repulsion = 9753.910227 eV Total energy + Delta-G solvation = -2174.739645 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.32717 -35.83660 -33.84457 -31.51043 -28.43195 -25.62766 -25.49627 -23.72777 -22.56964 -18.24776 -17.38089 -15.67916 -15.45300 -15.12476 -14.53623 -13.93176 -13.77777 -13.51768 -12.62337 -12.51374 -11.88854 -11.61148 -11.35269 -11.18648 -10.89455 -10.48694 -10.11323 -9.95477 -9.91721 -9.26903 -9.13165 -8.74391 -7.84823 -5.82301 -3.47518 3.35909 3.38311 3.42457 4.36144 4.60128 4.70749 5.14492 5.24364 5.45629 5.49985 5.58111 5.75270 5.81814 5.96105 6.06026 6.21719 6.33094 6.36486 6.47173 6.60884 6.66709 6.73162 6.82134 6.93287 7.55263 8.52453 9.58648 10.29773 11.37138 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056131 B = 0.011809 C = 0.010380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.717227 B = 2370.532767 C = 2696.736408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.127 4.127 4 C 0.096 3.904 5 O -0.277 6.277 6 C -0.366 4.366 7 H 0.059 0.941 8 C 0.025 3.975 9 N -0.879 5.879 10 Si 0.921 3.079 11 H -0.282 1.282 12 H -0.284 1.284 13 H -0.277 1.277 14 C 0.041 3.959 15 O -0.332 6.332 16 C 0.045 3.955 17 H 0.049 0.951 18 H 0.055 0.945 19 H 0.060 0.940 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.025 0.975 23 H 0.031 0.969 24 H 0.256 0.744 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -11.122 1.223 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.128 4.128 4 C 0.018 3.982 5 O -0.192 6.192 6 C -0.445 4.445 7 H 0.076 0.924 8 C -0.174 4.174 9 N -0.521 5.521 10 Si 0.748 3.252 11 H -0.208 1.208 12 H -0.210 1.210 13 H -0.202 1.202 14 C -0.037 4.037 15 O -0.249 6.249 16 C -0.032 4.032 17 H 0.068 0.932 18 H 0.074 0.926 19 H 0.079 0.921 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.049 -10.673 1.484 10.969 hybrid contribution -0.639 0.443 -0.804 1.118 sum -2.688 -10.230 0.681 10.599 Atomic orbital electron populations 1.21796 0.95706 1.00910 1.02561 1.21375 0.96317 0.94829 1.01744 1.23265 0.96646 0.95194 0.97669 1.21714 0.95306 0.86805 0.94346 1.85790 1.63212 1.11498 1.58684 1.20780 1.20811 0.88219 1.14696 0.92363 1.24929 0.97639 0.96654 0.98150 1.70078 1.30354 1.16876 1.34808 0.86045 0.78336 0.80953 0.79858 1.20832 1.20972 1.20187 1.23524 0.94854 0.90053 0.95244 1.90071 1.41190 1.39540 1.54093 1.23499 0.89198 0.96161 0.94343 0.93221 0.92578 0.92096 0.91740 0.91792 0.95712 0.95082 0.93419 0.89978 0.91930 0.92059 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.21 37.16 0.34 -1.61 15 2 C -0.10 -1.43 5.65 -26.73 -0.15 -1.58 15 3 C -0.13 -2.33 1.28 -154.13 -0.20 -2.53 15 4 C 0.10 2.15 5.09 37.16 0.19 2.34 15 5 O -0.28 -8.08 8.06 -35.63 -0.29 -8.37 15 6 C -0.37 -11.04 9.89 30.88 0.31 -10.73 15 7 H 0.06 1.65 7.77 -52.49 -0.41 1.25 15 8 C 0.03 0.76 5.49 -17.51 -0.10 0.66 15 9 N -0.88 -28.53 13.67 55.48 0.76 -27.77 15 10 Si 0.92 22.63 29.55 -169.99 -5.02 17.60 15 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 14 C 0.04 0.78 7.75 24.60 0.19 0.97 15 15 O -0.33 -7.88 11.70 -54.37 -0.64 -8.52 15 16 C 0.05 0.88 7.58 24.60 0.19 1.07 15 17 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.06 0.84 6.56 -51.93 -0.34 0.49 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.06 0.76 7.87 -51.93 -0.41 0.35 15 22 H 0.02 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.03 0.67 6.46 -51.93 -0.34 0.33 15 24 H 0.26 7.75 8.31 -40.82 -0.34 7.41 15 25 H 0.08 1.66 8.13 -51.93 -0.42 1.24 15 26 H 0.06 0.96 8.11 -51.93 -0.42 0.54 15 27 H 0.06 0.96 7.92 -51.93 -0.41 0.55 15 28 H 0.08 1.79 8.13 -51.93 -0.42 1.36 15 LS Contribution 238.07 15.07 3.59 3.59 Total: -1.00 -34.60 238.07 -4.82 -39.42 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -3.99 Total: -4.55 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 0.77 Total: -11.41 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.76 Total: -27.77 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.92 Total: -16.89 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -34.60 -4.82 -39.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.188 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds