Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46940 * 2 1 4 4 C 1.52998 * 113.54099 * 314.24771 * 3 2 1 5 5 O 1.42901 * 109.47607 * 175.42210 * 4 3 2 6 6 C 1.34925 * 116.99847 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00420 * 0.02562 * 6 5 4 8 8 C 1.38639 * 119.99568 * 179.97438 * 6 5 4 9 9 N 1.31583 * 119.99992 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47083 * 90.00203 * 10 8 6 12 12 H 1.48501 * 109.47239 * 210.00037 * 10 8 6 13 13 H 1.48494 * 109.47092 * 330.00141 * 10 8 6 14 14 C 1.53367 * 114.56478 * 180.02562 * 3 2 1 15 15 O 1.43355 * 88.44795 * 220.42142 * 14 3 2 16 16 C 1.43354 * 88.31830 * 28.15101 * 15 14 3 17 17 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.46632 * 299.99440 * 1 2 3 19 19 H 1.09001 * 109.47437 * 59.99865 * 1 2 3 20 20 H 1.09006 * 109.46518 * 240.00382 * 2 1 3 21 21 H 1.08999 * 109.47523 * 120.00679 * 2 1 3 22 22 H 1.09005 * 109.46879 * 295.42240 * 4 3 2 23 23 H 1.09001 * 109.47072 * 55.41585 * 4 3 2 24 24 H 0.96998 * 119.99925 * 179.97438 * 9 8 6 25 25 H 1.09006 * 113.39116 * 105.52823 * 14 3 2 26 26 H 1.08992 * 113.39243 * 335.31844 * 14 3 2 27 27 H 1.08998 * 113.38952 * 86.74569 * 16 15 14 28 28 H 1.09001 * 113.39148 * 216.94625 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3209 2.3448 -1.0048 5 8 1.7876 3.6875 -0.8584 6 6 1.2491 4.6157 -1.6763 7 1 0.5002 4.3289 -2.3997 8 6 1.6563 5.9380 -1.5872 9 7 2.5683 6.2875 -0.7054 10 14 0.9113 7.2230 -2.7199 11 1 -0.2925 7.8101 -2.0785 12 1 1.9075 8.2940 -2.9765 13 1 0.5267 6.5866 -4.0053 14 6 3.5676 1.5787 -0.0006 15 8 3.4324 2.6617 0.9288 16 6 2.2199 2.0552 1.3944 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3632 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8899 22 1 1.5263 1.9971 -2.0172 23 1 0.2472 2.3111 -0.8199 24 1 2.8534 7.2126 -0.6434 25 1 3.9744 1.8840 -0.9647 26 1 4.0795 0.7117 0.4167 27 1 2.3800 1.3125 2.1760 28 1 1.4459 2.7779 1.6527 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260435017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = -72.293163 kcal Electronic energy + Delta-G solvation = -11929.720106 eV Core-core repulsion = 9753.910227 eV Total energy + Delta-G solvation = -2175.809879 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.88996 -37.91196 -35.22945 -33.73840 -29.87577 -27.49157 -27.05204 -25.84180 -23.73711 -19.92347 -19.41130 -17.55863 -16.99233 -16.79737 -16.32560 -15.64017 -15.54951 -15.01368 -14.32502 -13.77511 -13.56727 -13.21305 -13.11641 -12.79406 -12.52407 -12.13937 -11.87376 -11.55239 -11.33426 -11.11611 -11.00977 -10.38985 -10.08345 -8.11982 -5.82874 1.37995 1.45168 1.54176 2.33738 3.11799 3.17984 3.22167 3.70889 3.88365 4.21005 4.35985 4.43661 4.54696 4.66995 4.69856 4.71371 4.88280 4.96666 5.02684 5.14468 5.20906 5.29183 5.40030 5.42298 5.49047 6.23094 7.28657 8.13639 9.11646 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056131 B = 0.011809 C = 0.010380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.717227 B = 2370.532767 C = 2696.736408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.119 4.119 4 C 0.086 3.914 5 O -0.316 6.316 6 C -0.383 4.383 7 H 0.069 0.931 8 C -0.042 4.042 9 N -0.933 5.933 10 Si 1.004 2.996 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.259 1.259 14 C 0.040 3.960 15 O -0.390 6.390 16 C 0.045 3.955 17 H 0.078 0.922 18 H 0.050 0.950 19 H 0.043 0.957 20 H 0.080 0.920 21 H 0.094 0.906 22 H 0.027 0.973 23 H 0.038 0.962 24 H 0.257 0.743 25 H 0.057 0.943 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -12.668 0.795 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.132 4.132 3 C -0.119 4.119 4 C 0.009 3.991 5 O -0.232 6.232 6 C -0.462 4.462 7 H 0.087 0.913 8 C -0.236 4.236 9 N -0.577 5.577 10 Si 0.826 3.174 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.183 1.183 14 C -0.037 4.037 15 O -0.309 6.309 16 C -0.032 4.032 17 H 0.097 0.903 18 H 0.069 0.931 19 H 0.062 0.938 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.897 -12.260 1.048 12.641 hybrid contribution -0.388 0.826 -0.648 1.119 sum -3.285 -11.435 0.400 11.904 Atomic orbital electron populations 1.21804 0.95242 1.02504 1.01512 1.21391 0.96643 0.91195 1.04007 1.23160 0.96000 0.97142 0.95589 1.22044 0.96339 0.84683 0.96063 1.85742 1.64273 1.14096 1.59056 1.21341 1.20853 0.89140 1.14875 0.91337 1.26224 0.98098 0.99190 1.00054 1.70282 1.32540 1.17559 1.37364 0.84790 0.77528 0.77212 0.77864 1.19572 1.20538 1.18287 1.23769 0.95756 0.90242 0.93920 1.90023 1.42956 1.42281 1.55620 1.23715 0.87170 0.96157 0.96174 0.90279 0.93122 0.93753 0.90153 0.88774 0.95471 0.94412 0.93401 0.92415 0.87102 0.87333 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.21 71.98 0.66 -2.81 15 2 C -0.10 -2.23 5.65 30.59 0.17 -2.06 15 3 C -0.12 -4.19 1.28 -51.94 -0.07 -4.26 15 4 C 0.09 3.86 5.09 71.98 0.37 4.23 15 5 O -0.32 -19.03 8.06 -63.64 -0.51 -19.54 15 6 C -0.38 -23.58 9.89 67.92 0.67 -22.91 15 7 H 0.07 3.91 7.77 -2.91 -0.02 3.89 15 8 C -0.04 -2.60 5.49 84.83 0.47 -2.14 15 9 N -0.93 -62.45 13.67 21.61 0.30 -62.16 15 10 Si 1.00 46.83 29.55 68.60 2.03 48.85 15 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 13 H -0.26 -11.19 7.11 99.48 0.71 -10.49 15 14 C 0.04 1.48 7.75 63.85 0.49 1.97 15 15 O -0.39 -18.85 11.70 -130.68 -1.53 -20.38 15 16 C 0.04 1.70 7.58 63.85 0.48 2.18 15 17 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 18 H 0.05 1.19 8.14 -2.39 -0.02 1.17 15 19 H 0.04 1.13 6.56 -2.39 -0.02 1.12 15 20 H 0.08 1.68 8.14 -2.38 -0.02 1.66 15 21 H 0.09 1.72 7.87 -2.39 -0.02 1.70 15 22 H 0.03 1.19 8.14 -2.38 -0.02 1.17 15 23 H 0.04 1.63 6.46 -2.39 -0.02 1.62 15 24 H 0.26 16.05 8.31 -92.71 -0.77 15.28 15 25 H 0.06 2.37 8.13 -2.38 -0.02 2.35 15 26 H 0.11 3.02 8.11 -2.39 -0.02 3.00 15 27 H 0.11 3.06 7.92 -2.39 -0.02 3.04 15 28 H 0.05 2.31 8.13 -2.39 -0.02 2.29 15 Total: -1.00 -77.87 238.07 4.66 -73.21 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.12 Total: 5.80 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 3.25 Total: -25.78 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.30 Total: -62.16 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -2.04 Total: -39.92 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -77.87 4.66 -73.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.918 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds