Wall clock time and date at job start Mon Mar 30 2020 01:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75789 * 124.93583 * 2 1 4 4 C 1.75886 * 91.15346 * 180.09656 * 3 2 1 5 5 C 1.39881 * 125.38755 * 179.97438 * 4 3 2 6 6 H 1.07992 * 120.00156 * 189.30704 * 5 4 3 7 7 C 1.40061 * 119.99839 * 9.30494 * 5 4 3 8 8 N 1.30882 * 119.99870 * 175.77039 * 7 5 4 9 9 Si 1.86797 * 119.99994 * 355.77902 * 7 5 4 10 10 H 1.48503 * 109.47051 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46885 * 299.99363 * 9 7 5 12 12 H 1.48501 * 109.47404 * 59.99722 * 9 7 5 13 13 C 1.38299 * 109.22233 * 359.68367 * 4 3 2 14 14 C 1.34742 * 124.92926 * 179.74681 * 2 1 3 15 15 F 1.35099 * 122.35594 * 359.97438 * 14 2 1 16 16 H 1.09005 * 109.47007 * 270.25718 * 1 2 3 17 17 H 1.09004 * 109.46874 * 30.25055 * 1 2 3 18 18 H 1.08995 * 109.47814 * 150.25471 * 1 2 3 19 19 H 0.97003 * 119.99637 * 357.90737 * 8 7 5 20 20 H 1.07997 * 122.89294 * 180.23866 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5137 1.4411 0.0000 4 6 3.9755 0.4631 -0.0030 5 6 5.2829 0.9605 -0.0048 6 1 6.1155 0.2901 -0.1578 7 6 5.5121 2.3282 0.1918 8 7 6.7372 2.7814 0.2728 9 14 4.0691 3.5054 0.3385 10 1 4.5757 4.8867 0.5402 11 1 3.2588 3.4525 -0.9048 12 1 3.2258 3.1129 1.4961 13 6 3.6279 -0.8755 0.0034 14 6 2.2785 -1.1047 0.0049 15 9 1.7568 -2.3509 0.0109 16 1 -0.3633 0.0046 1.0277 17 1 -0.3633 0.8878 -0.5177 18 1 -0.3634 -0.8922 -0.5098 19 1 7.4859 2.1663 0.2271 20 1 4.3582 -1.6711 0.0068 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446406.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:24 Heat of formation + Delta-G solvation = -50.858408 kcal Electronic energy + Delta-G solvation = -9147.648908 eV Core-core repulsion = 7156.227982 eV Total energy + Delta-G solvation = -1991.420926 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.021 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -47.73169 -35.92850 -34.00029 -30.95030 -27.76336 -23.28438 -21.40982 -19.10093 -18.06310 -16.11351 -15.03839 -14.64958 -14.57566 -13.45149 -13.27474 -12.60272 -12.39941 -12.11965 -11.95409 -11.43833 -10.69544 -10.42902 -10.24896 -9.94045 -9.72363 -8.84905 -7.77430 -7.54170 -7.02419 -4.75241 2.29179 2.54280 3.03557 3.07619 3.14842 3.69996 3.79423 3.81622 4.78875 5.80475 6.12481 6.20954 6.30383 6.57806 6.88596 7.07704 7.18555 7.35851 7.61297 7.81628 8.15036 8.28467 9.61041 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.062459 B = 0.017262 C = 0.013653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.188745 B = 1621.646201 C = 2050.373759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.389 4.389 3 S -0.010 6.010 4 C 0.065 3.935 5 C -0.431 4.431 6 H 0.097 0.903 7 C 0.050 3.950 8 N -0.789 5.789 9 Si 0.922 3.078 10 H -0.227 1.227 11 H -0.202 1.202 12 H -0.201 1.201 13 C -0.392 4.392 14 C 0.159 3.841 15 F -0.158 7.158 16 H 0.044 0.956 17 H 0.048 0.952 18 H 0.050 0.950 19 H 0.292 0.708 20 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 1.192 0.014 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.502 4.502 3 S 0.243 5.757 4 C -0.054 4.054 5 C -0.467 4.467 6 H 0.114 0.886 7 C -0.175 4.175 8 N -0.410 5.410 9 Si 0.744 3.256 10 H -0.150 1.150 11 H -0.129 1.129 12 H -0.126 1.126 13 C -0.416 4.416 14 C 0.130 3.870 15 F -0.138 7.138 16 H 0.062 0.938 17 H 0.067 0.933 18 H 0.069 0.931 19 H 0.104 0.896 20 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.738 4.157 0.215 7.089 hybrid contribution 0.884 -3.481 -0.226 3.599 sum -4.854 0.676 -0.011 4.901 Atomic orbital electron populations 1.19701 0.89995 1.00456 0.99935 1.23466 0.98310 0.95239 1.33204 1.84241 0.99975 1.10085 1.81420 1.21343 0.94552 0.93947 0.95604 1.20328 0.92248 0.95812 1.38280 0.88555 1.27385 1.02085 0.97576 0.90438 1.70579 0.99992 1.40679 1.29767 0.84559 0.76009 0.80079 0.84999 1.15048 1.12855 1.12623 1.19412 0.93148 0.95716 1.33290 1.16093 0.91433 0.77704 1.01761 1.91306 1.87591 1.40395 1.94468 0.93752 0.93268 0.93074 0.89568 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.82 10.26 36.00 0.37 -0.45 14 2 C -0.39 -9.17 6.53 -35.55 -0.23 -9.40 14 3 S -0.01 -0.23 15.42 -107.50 -1.66 -1.89 14 4 C 0.06 1.67 6.02 -38.94 -0.23 1.44 14 5 C -0.43 -11.18 9.73 -38.28 -0.37 -11.55 14 6 H 0.10 2.53 8.06 -52.49 -0.42 2.11 14 7 C 0.05 1.23 5.52 -17.27 -0.10 1.13 14 8 N -0.79 -19.64 13.66 55.56 0.76 -18.88 14 9 Si 0.92 19.25 24.51 -169.99 -4.17 15.08 14 10 H -0.23 -4.45 7.11 56.52 0.40 -4.05 14 11 H -0.20 -4.05 6.29 60.23 0.38 -3.68 14 12 H -0.20 -4.09 6.37 58.18 0.37 -3.72 14 13 C -0.39 -10.16 10.21 -40.05 -0.41 -10.57 14 14 C 0.16 3.98 7.28 -41.31 -0.30 3.68 14 15 F -0.16 -3.75 17.08 2.25 0.04 -3.71 14 16 H 0.04 0.79 8.14 -51.93 -0.42 0.37 14 17 H 0.05 0.86 8.14 -51.93 -0.42 0.43 14 18 H 0.05 0.93 8.05 -51.93 -0.42 0.51 14 19 H 0.29 7.01 8.72 -40.82 -0.36 6.65 14 20 H 0.12 2.90 8.06 -52.49 -0.42 2.48 14 LS Contribution 195.15 15.07 2.94 2.94 Total: -1.00 -26.40 195.15 -4.67 -31.08 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.11 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -1.27 Total: -25.72 kcal Atomic # 7 Polarization: -19.64 SS G_CDS: 0.76 Total: -18.88 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.17 Total: 15.08 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -1.66 Total: -1.89 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -26.40 -4.67 -31.08 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446406.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.780 kcal (2) G-P(sol) polarization free energy of solvation -26.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds