Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75444 * 124.54980 * 2 1 4 4 C 1.70429 * 92.59657 * 179.97438 * 3 2 1 5 5 C 1.37518 * 110.68462 * 359.97438 * 4 3 2 6 6 C 1.41229 * 123.65318 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99957 * 159.06627 * 6 5 4 8 8 C 1.39695 * 120.00670 * 338.78818 * 6 5 4 9 9 N 1.31070 * 119.99505 * 348.86828 * 8 6 5 10 10 Si 1.86798 * 120.00682 * 168.86550 * 8 6 5 11 11 H 1.48501 * 109.46782 * 89.99925 * 10 8 6 12 12 H 1.48499 * 109.47380 * 209.99966 * 10 8 6 13 13 H 1.48502 * 109.47047 * 330.00678 * 10 8 6 14 14 C 1.32649 * 124.55339 * 180.29977 * 2 1 3 15 15 F 1.35096 * 123.43293 * 359.97438 * 14 2 1 16 16 H 1.08993 * 109.47178 * 0.02646 * 1 2 3 17 17 H 1.09001 * 109.47130 * 120.02578 * 1 2 3 18 18 H 1.08995 * 109.47386 * 240.02237 * 1 2 3 19 19 H 1.08003 * 124.66210 * 179.97438 * 4 3 2 20 20 H 0.96994 * 119.99652 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5020 1.4450 0.0000 4 6 3.9481 0.5431 0.0008 5 6 3.6793 -0.8056 0.0016 6 6 4.6793 -1.8029 0.0018 7 1 4.4449 -2.8026 0.3366 8 6 5.9702 -1.4979 -0.4364 9 7 6.2033 -0.3625 -1.0483 10 14 7.3641 -2.7081 -0.1505 11 1 7.4589 -3.6360 -1.3061 12 1 8.6422 -1.9660 -0.0055 13 1 7.0994 -3.4847 1.0873 14 6 2.2594 -1.0925 -0.0057 15 9 1.7530 -2.3449 -0.0118 16 1 -0.3633 1.0276 -0.0005 17 1 -0.3633 -0.5142 -0.8898 18 1 -0.3634 -0.5135 0.8901 19 1 4.9394 0.9717 0.0006 20 1 7.0997 -0.1505 -1.3523 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260468190.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = -36.701059 kcal Electronic energy + Delta-G solvation = -9167.001240 eV Core-core repulsion = 7176.194223 eV Total energy + Delta-G solvation = -1990.807018 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.021 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -47.61321 -36.02984 -33.26968 -30.56909 -26.44717 -24.78898 -21.27321 -18.68047 -16.84777 -16.17779 -15.14376 -14.57502 -14.31075 -13.23026 -12.85339 -12.68181 -12.23646 -11.78152 -11.41449 -10.91554 -10.77955 -10.64017 -10.40902 -9.93093 -9.43026 -9.13688 -7.25482 -7.07558 -6.61364 -4.30370 2.38383 2.91148 3.01848 3.11874 3.17701 3.73428 3.95204 4.03774 5.23169 5.62296 5.73604 6.03585 6.06952 6.37761 6.85686 7.23497 7.28866 7.69162 7.95084 8.47628 8.77606 8.90492 10.34322 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.060934 B = 0.014416 C = 0.011921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.403796 B = 1941.753287 C = 2348.270646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.261 4.261 3 S 0.061 5.939 4 C -0.332 4.332 5 C 0.045 3.955 6 C -0.437 4.437 7 H 0.075 0.925 8 C 0.069 3.931 9 N -0.806 5.806 10 Si 0.914 3.086 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.263 1.263 14 C 0.066 3.934 15 F -0.142 7.142 16 H 0.060 0.940 17 H 0.060 0.940 18 H 0.060 0.940 19 H 0.167 0.833 20 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 0.969 1.258 4.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.378 4.378 3 S 0.321 5.679 4 C -0.469 4.469 5 C 0.036 3.964 6 C -0.471 4.471 7 H 0.093 0.907 8 C -0.146 4.146 9 N -0.434 5.434 10 Si 0.739 3.261 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.187 1.187 14 C 0.031 3.969 15 F -0.121 7.121 16 H 0.079 0.921 17 H 0.079 0.921 18 H 0.079 0.921 19 H 0.184 0.816 20 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.959 2.563 1.144 4.853 hybrid contribution 1.065 -2.300 -0.023 2.535 sum -2.894 0.263 1.121 3.114 Atomic orbital electron populations 1.20050 0.89260 1.01515 1.01512 1.23608 0.99123 0.97180 1.17874 1.81861 0.98311 1.08728 1.79011 1.24650 0.99547 0.95589 1.27149 1.17592 0.88088 0.93626 0.97112 1.18960 0.93289 0.96761 1.38124 0.90651 1.25729 0.99811 0.96122 0.92940 1.69833 1.22404 1.22589 1.28575 0.86208 0.79649 0.80479 0.79728 1.19663 1.20242 1.18671 1.18112 0.93077 0.78211 1.07488 1.91315 1.87364 1.39095 1.94326 0.92129 0.92087 0.92090 0.81622 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.21 36.01 0.37 -0.76 14 2 C -0.26 -5.85 6.42 -36.20 -0.23 -6.08 14 3 S 0.06 1.35 22.98 -107.50 -2.47 -1.12 14 4 C -0.33 -8.82 9.67 30.47 0.29 -8.52 14 5 C 0.05 1.26 5.70 -106.40 -0.61 0.66 14 6 C -0.44 -12.27 9.22 -37.90 -0.35 -12.62 14 7 H 0.08 2.06 7.87 -52.49 -0.41 1.65 14 8 C 0.07 1.81 5.37 -17.33 -0.09 1.72 14 9 N -0.81 -21.67 10.79 55.54 0.60 -21.07 14 10 Si 0.91 19.61 29.57 -169.99 -5.03 14.59 14 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 14 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 13 H -0.26 -5.58 7.11 56.52 0.40 -5.18 14 14 C 0.07 1.69 7.50 -38.86 -0.29 1.40 14 15 F -0.14 -3.50 17.08 2.25 0.04 -3.46 14 16 H 0.06 0.92 8.13 -51.93 -0.42 0.49 14 17 H 0.06 1.00 8.14 -51.93 -0.42 0.58 14 18 H 0.06 0.99 8.14 -51.93 -0.42 0.56 14 19 H 0.17 4.60 6.29 -52.48 -0.33 4.27 14 20 H 0.28 6.77 8.30 -40.82 -0.34 6.43 14 LS Contribution 202.71 15.07 3.05 3.05 Total: -1.00 -28.25 202.71 -5.86 -34.11 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -1.15 Total: -1.89 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -0.91 Total: -24.20 kcal Atomic # 7 Polarization: -21.67 SS G_CDS: 0.60 Total: -21.07 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.47 Total: -1.12 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -28.25 -5.86 -34.11 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468190.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.592 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds