Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 13 13 H 1.09003 * 110.75997 * 182.03861 * 12 2 1 14 14 C 1.55127 * 110.85821 * 305.76489 * 12 2 1 15 15 C 1.53858 * 106.90067 * 160.28944 * 14 12 2 16 16 C 1.54264 * 108.92839 * 312.74673 * 15 14 12 17 17 S 1.83096 * 104.65175 * 27.94980 * 16 15 14 18 18 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 19 19 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 21 21 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 22 22 H 1.08996 * 109.97854 * 279.65336 * 14 12 2 23 23 H 1.09001 * 109.97643 * 40.93230 * 14 12 2 24 24 H 1.09001 * 109.61137 * 192.81862 * 15 14 12 25 25 H 1.09005 * 109.46418 * 72.58043 * 15 14 12 26 26 H 1.09005 * 110.40284 * 269.15393 * 16 15 14 27 27 H 1.09001 * 110.50281 * 146.79270 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0400 -0.7212 1.2492 13 1 3.1291 -0.7022 1.2888 14 6 1.4253 -0.1041 2.5329 15 6 1.5719 -1.1538 3.6482 16 6 1.1031 -2.5223 3.1121 17 16 1.4143 -2.4448 1.3095 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 0.7011 1.1560 -3.4844 22 1 1.9631 0.8044 2.8037 23 1 0.3714 0.1212 2.3699 24 1 0.9601 -0.8668 4.5034 25 1 2.6169 -1.2182 3.9514 26 1 0.0403 -2.6636 3.3086 27 1 1.6824 -3.3279 3.5634 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479483.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = -35.909561 kcal Electronic energy + Delta-G solvation = -9848.899704 eV Core-core repulsion = 8117.420408 eV Total energy + Delta-G solvation = -1731.479296 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.97615 -35.47942 -32.93353 -28.75512 -27.33915 -25.58756 -22.49889 -20.80893 -18.34977 -17.11998 -16.90709 -16.11891 -15.05148 -14.96153 -14.68240 -13.98882 -13.38165 -13.14688 -12.82051 -12.47258 -12.39070 -12.32313 -12.06381 -11.77154 -11.56237 -11.19109 -10.88188 -10.51948 -10.32041 -8.36652 -8.08848 -6.19938 1.16223 1.37465 1.39862 1.51302 1.83944 2.43283 3.19887 3.84896 3.94266 4.13811 4.32823 4.46420 4.67484 4.82102 4.84539 5.00268 5.03974 5.04903 5.21253 5.37056 5.44852 5.62494 5.91931 6.14186 6.38262 6.87954 7.46655 8.96033 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.065143 B = 0.012847 C = 0.011642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.720905 B = 2179.032583 C = 2404.449746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.056 3.944 3 H 0.010 0.990 4 C -0.517 4.517 5 H 0.046 0.954 6 C 0.013 3.987 7 N -0.916 5.916 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.277 1.277 12 C -0.010 4.010 13 H 0.072 0.928 14 C -0.131 4.131 15 C -0.117 4.117 16 C -0.073 4.073 17 S -0.347 6.347 18 H 0.049 0.951 19 H 0.036 0.964 20 H 0.034 0.966 21 H 0.260 0.740 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -2.826 11.096 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.036 3.964 3 H 0.028 0.972 4 C -0.556 4.556 5 H 0.064 0.936 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.203 1.203 12 C -0.138 4.138 13 H 0.091 0.909 14 C -0.170 4.170 15 C -0.156 4.156 16 C -0.221 4.221 17 S -0.121 6.121 18 H 0.068 0.932 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.069 0.931 22 H 0.108 0.892 23 H 0.095 0.905 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.177 -3.556 10.122 10.730 hybrid contribution 0.460 0.501 -0.422 0.800 sum 0.637 -3.055 9.700 10.190 Atomic orbital electron populations 1.21726 0.97617 0.99677 0.99364 1.18517 0.93698 0.93829 0.90325 0.97169 1.21427 1.30596 1.11699 0.91838 0.93614 1.25636 0.95453 0.95771 1.01623 1.70014 1.37781 1.24165 1.23692 0.85657 0.78189 0.78752 0.80008 1.19800 1.20704 1.20273 1.24102 1.00331 0.90418 0.98980 0.90920 1.22825 1.02346 0.99614 0.92204 1.22240 1.03129 0.91572 0.98612 1.24070 1.05011 1.01304 0.91742 1.87958 1.86890 1.23708 1.13564 0.93232 0.94519 0.94685 0.93093 0.89213 0.90521 0.87761 0.90285 0.88693 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.33 71.98 0.60 -5.60 15 2 C 0.06 2.82 2.27 -11.54 -0.03 2.79 15 3 H 0.01 0.57 8.14 -2.38 -0.02 0.55 15 4 C -0.52 -29.35 7.99 25.60 0.20 -29.15 15 5 H 0.05 2.66 7.49 -2.91 -0.02 2.64 15 6 C 0.01 0.76 5.30 84.66 0.45 1.21 15 7 N -0.92 -53.95 11.31 21.45 0.24 -53.71 15 8 Si 0.95 45.52 29.54 68.60 2.03 47.54 15 9 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 10 H -0.28 -13.27 7.11 99.48 0.71 -12.57 15 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 12 C -0.01 -0.41 3.04 31.32 0.10 -0.32 15 13 H 0.07 3.02 8.14 -2.39 -0.02 3.00 15 14 C -0.13 -4.08 5.76 31.61 0.18 -3.90 15 15 C -0.12 -2.80 6.38 31.31 0.20 -2.60 15 16 C -0.07 -1.99 7.34 72.41 0.53 -1.45 15 17 S -0.35 -14.03 20.48 -56.49 -1.16 -15.18 15 18 H 0.05 2.73 6.06 -2.39 -0.01 2.71 15 19 H 0.04 1.82 6.97 -2.38 -0.02 1.80 15 20 H 0.03 1.48 6.07 -2.39 -0.01 1.47 15 21 H 0.26 14.53 8.31 -92.70 -0.77 13.76 15 22 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.08 2.50 5.68 -2.39 -0.01 2.49 15 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.08 1.72 8.14 -2.38 -0.02 1.70 15 26 H 0.09 2.34 8.14 -2.38 -0.02 2.32 15 27 H 0.10 2.39 8.14 -2.39 -0.02 2.38 15 Total: -1.00 -62.72 226.63 4.48 -58.24 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.13 Total: 2.13 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 2.24 Total: -39.02 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.24 Total: -53.71 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -14.03 SS G_CDS: -1.16 Total: -15.18 kcal Total: -62.72 4.48 -58.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479483.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.327 kcal (2) G-P(sol) polarization free energy of solvation -62.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds