Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47038 * 2 1 4 4 C 1.50696 * 109.47288 * 120.00141 * 2 1 3 5 5 H 1.07992 * 120.00205 * 120.00322 * 4 2 1 6 6 C 1.37883 * 119.99522 * 299.99873 * 4 2 1 7 7 N 1.31520 * 119.99610 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00343 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47043 * 89.99730 * 8 6 4 10 10 H 1.48498 * 109.47230 * 209.99519 * 8 6 4 11 11 H 1.48500 * 109.47374 * 330.00073 * 8 6 4 12 12 C 1.53003 * 109.47096 * 240.00073 * 2 1 3 13 13 H 1.09002 * 110.76025 * 299.29610 * 12 2 1 14 14 C 1.55140 * 111.03343 * 62.91609 * 12 2 1 15 15 C 1.53852 * 106.89607 * 160.37299 * 14 12 2 16 16 C 1.54277 * 108.93029 * 312.74249 * 15 14 12 17 17 S 1.83104 * 104.64764 * 27.95564 * 16 15 14 18 18 H 1.08998 * 109.47167 * 299.99454 * 1 2 3 19 19 H 1.09000 * 109.47008 * 60.00132 * 1 2 3 20 20 H 1.09007 * 109.47034 * 179.97438 * 1 2 3 21 21 H 0.97001 * 120.00043 * 180.02562 * 7 6 4 22 22 H 1.08994 * 109.97441 * 279.73844 * 14 12 2 23 23 H 1.09001 * 109.96993 * 41.01215 * 14 12 2 24 24 H 1.09009 * 109.60930 * 192.82811 * 15 14 12 25 25 H 1.08994 * 109.61613 * 72.66786 * 15 14 12 26 26 H 1.08999 * 110.40283 * 269.16708 * 16 15 14 27 27 H 1.08997 * 110.40320 * 146.74274 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8726 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1765 1.4920 12 6 2.0400 -0.7212 -1.2493 13 1 1.6986 -1.7563 -1.2643 14 6 1.6041 0.0229 -2.5388 15 6 2.5385 -0.4503 -3.6658 16 6 3.9960 -0.3972 -3.1628 17 16 3.8698 -0.6354 -1.3517 18 1 -0.3633 0.5137 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.9035 -0.5278 4.4375 22 1 0.5713 -0.2269 -2.7818 23 1 1.7042 1.0993 -2.3994 24 1 2.4265 0.2020 -4.5320 25 1 2.2852 -1.4727 -3.9460 26 1 4.4408 0.5719 -3.3884 27 1 4.5822 -1.1992 -3.6115 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260479486.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -15.672726 kcal Electronic energy + Delta-G solvation = -9823.463704 eV Core-core repulsion = 8092.861943 eV Total energy + Delta-G solvation = -1730.601761 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.53984 -33.86671 -31.45783 -27.80753 -25.32496 -24.13773 -20.93439 -19.41040 -16.66943 -16.01830 -15.09284 -14.52632 -13.73380 -13.49539 -12.81258 -12.49891 -12.28893 -11.80150 -11.65569 -11.25984 -10.90641 -10.57013 -10.36072 -10.08401 -9.90858 -9.31491 -9.21149 -8.89164 -8.49852 -6.91578 -6.02052 -4.00690 2.50244 3.19571 3.29203 3.40150 3.42603 4.44684 4.98576 5.00370 5.27570 5.31387 5.50062 5.68096 5.86534 5.89439 6.02976 6.14759 6.19208 6.34571 6.49556 6.65597 6.69875 7.01532 7.46279 7.76864 8.54956 9.02990 9.59295 11.11279 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.058845 B = 0.013857 C = 0.012168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.710575 B = 2020.137165 C = 2300.610034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.025 3.975 3 H 0.037 0.963 4 C -0.508 4.508 5 H 0.077 0.923 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.888 3.112 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.266 1.266 12 C -0.008 4.008 13 H 0.087 0.913 14 C -0.131 4.131 15 C -0.126 4.126 16 C -0.097 4.097 17 S -0.267 6.267 18 H 0.041 0.959 19 H 0.030 0.970 20 H 0.052 0.948 21 H 0.263 0.737 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.606 2.376 -12.503 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.226 1.226 11 H -0.192 1.192 12 C -0.136 4.136 13 H 0.106 0.894 14 C -0.170 4.170 15 C -0.164 4.164 16 C -0.245 4.245 17 S -0.039 6.039 18 H 0.060 0.940 19 H 0.049 0.951 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.704 2.283 -11.491 11.737 hybrid contribution -1.463 0.806 -0.609 1.778 sum -2.167 3.089 -12.101 12.675 Atomic orbital electron populations 1.22197 0.98734 1.00801 0.98696 1.19151 0.91528 0.96649 0.92176 0.94523 1.20977 1.31565 1.13650 0.88412 0.90462 1.24987 0.95785 0.96520 0.95840 1.69903 1.45677 1.40367 0.97874 0.86842 0.80415 0.83959 0.76904 1.20763 1.22578 1.19159 1.24041 0.89972 1.02216 0.97367 0.89434 1.22762 0.99548 1.01264 0.93400 1.22258 0.93159 1.02102 0.98915 1.23984 0.99130 1.04257 0.97170 1.88056 1.13283 1.96481 1.06080 0.94010 0.95057 0.92857 0.92731 0.90436 0.90763 0.91078 0.91331 0.89979 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.48 37.16 0.32 -2.75 15 2 C 0.03 0.58 1.50 -91.77 -0.14 0.45 15 3 H 0.04 0.90 7.20 -51.93 -0.37 0.53 15 4 C -0.51 -14.38 8.62 -34.44 -0.30 -14.68 15 5 H 0.08 2.41 7.86 -52.49 -0.41 2.00 15 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 15 7 N -0.90 -28.04 13.96 55.43 0.77 -27.27 15 8 Si 0.89 22.25 24.37 -169.99 -4.14 18.11 15 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 15 10 H -0.30 -7.52 7.11 56.52 0.40 -7.12 15 11 H -0.27 -6.40 6.53 56.52 0.37 -6.03 15 12 C -0.01 -0.15 2.68 -25.60 -0.07 -0.22 15 13 H 0.09 1.76 8.14 -51.93 -0.42 1.34 15 14 C -0.13 -2.03 5.04 -25.15 -0.13 -2.15 15 15 C -0.13 -1.66 6.38 -25.62 -0.16 -1.82 15 16 C -0.10 -1.42 7.34 37.83 0.28 -1.14 15 17 S -0.27 -5.44 22.10 -107.50 -2.38 -7.81 15 18 H 0.04 0.93 3.27 -51.93 -0.17 0.76 15 19 H 0.03 0.55 7.16 -51.93 -0.37 0.17 15 20 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 22 H 0.08 1.07 7.80 -51.93 -0.40 0.67 15 23 H 0.07 1.17 8.08 -51.93 -0.42 0.75 15 24 H 0.07 0.77 8.14 -51.92 -0.42 0.35 15 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 224.95 15.07 3.39 3.39 Total: -1.00 -30.60 224.95 -6.52 -37.12 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -3.87 Total: -3.18 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -0.30 Total: -20.36 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.77 Total: -27.27 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -2.38 Total: -7.81 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.60 -6.52 -37.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479486.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.446 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds