Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47038 * 2 1 4 4 C 1.50696 * 109.47288 * 120.00141 * 2 1 3 5 5 H 1.07992 * 120.00205 * 120.00322 * 4 2 1 6 6 C 1.37883 * 119.99522 * 299.99873 * 4 2 1 7 7 N 1.31520 * 119.99610 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00343 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47043 * 89.99730 * 8 6 4 10 10 H 1.48498 * 109.47230 * 209.99519 * 8 6 4 11 11 H 1.48500 * 109.47374 * 330.00073 * 8 6 4 12 12 C 1.53003 * 109.47096 * 240.00073 * 2 1 3 13 13 H 1.09002 * 110.76025 * 299.29610 * 12 2 1 14 14 C 1.55140 * 111.03343 * 62.91609 * 12 2 1 15 15 C 1.53852 * 106.89607 * 160.37299 * 14 12 2 16 16 C 1.54277 * 108.93029 * 312.74249 * 15 14 12 17 17 S 1.83104 * 104.64764 * 27.95564 * 16 15 14 18 18 H 1.08998 * 109.47167 * 299.99454 * 1 2 3 19 19 H 1.09000 * 109.47008 * 60.00132 * 1 2 3 20 20 H 1.09007 * 109.47034 * 179.97438 * 1 2 3 21 21 H 0.97001 * 120.00043 * 180.02562 * 7 6 4 22 22 H 1.08994 * 109.97441 * 279.73844 * 14 12 2 23 23 H 1.09001 * 109.96993 * 41.01215 * 14 12 2 24 24 H 1.09009 * 109.60930 * 192.82811 * 15 14 12 25 25 H 1.08994 * 109.61613 * 72.66786 * 15 14 12 26 26 H 1.08999 * 110.40283 * 269.16708 * 16 15 14 27 27 H 1.08997 * 110.40320 * 146.74274 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8726 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1765 1.4920 12 6 2.0400 -0.7212 -1.2493 13 1 1.6986 -1.7563 -1.2643 14 6 1.6041 0.0229 -2.5388 15 6 2.5385 -0.4503 -3.6658 16 6 3.9960 -0.3972 -3.1628 17 16 3.8698 -0.6354 -1.3517 18 1 -0.3633 0.5137 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.9035 -0.5278 4.4375 22 1 0.5713 -0.2269 -2.7818 23 1 1.7042 1.0993 -2.3994 24 1 2.4265 0.2020 -4.5320 25 1 2.2852 -1.4727 -3.9460 26 1 4.4408 0.5719 -3.3884 27 1 4.5822 -1.1992 -3.6115 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479486.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -35.562897 kcal Electronic energy + Delta-G solvation = -9824.326207 eV Core-core repulsion = 8092.861943 eV Total energy + Delta-G solvation = -1731.464264 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.04785 -35.50756 -33.46261 -29.24341 -27.22040 -25.66651 -22.36868 -21.00889 -18.74843 -17.62842 -16.71157 -16.09590 -15.21581 -15.08697 -14.36633 -14.36119 -13.96766 -13.29598 -13.22264 -12.78241 -12.35469 -12.04381 -11.99734 -11.69098 -11.61120 -11.21939 -11.01603 -10.74529 -10.47459 -8.54003 -8.26529 -6.29759 1.09588 1.30220 1.37249 1.47492 1.79802 2.34424 3.09792 3.77397 3.88841 4.08472 4.20708 4.43131 4.48559 4.65233 4.77719 4.84731 4.90194 4.96599 5.02480 5.06599 5.25900 5.30663 5.66765 5.68862 6.31395 6.76193 7.33818 8.90854 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.058845 B = 0.013857 C = 0.012168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.710575 B = 2020.137165 C = 2300.610034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.024 3.976 3 H 0.027 0.973 4 C -0.507 4.507 5 H 0.028 0.972 6 C 0.005 3.995 7 N -0.955 5.955 8 Si 0.955 3.045 9 H -0.262 1.262 10 H -0.304 1.304 11 H -0.246 1.246 12 C 0.001 3.999 13 H 0.076 0.924 14 C -0.123 4.123 15 C -0.120 4.120 16 C -0.070 4.070 17 S -0.374 6.374 18 H 0.030 0.970 19 H 0.075 0.925 20 H 0.053 0.947 21 H 0.264 0.736 22 H 0.104 0.896 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 3.941 -15.430 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.004 3.996 3 H 0.045 0.955 4 C -0.545 4.545 5 H 0.046 0.954 6 C -0.191 4.191 7 N -0.596 5.596 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.232 1.232 11 H -0.170 1.170 12 C -0.127 4.127 13 H 0.095 0.905 14 C -0.162 4.162 15 C -0.158 4.158 16 C -0.218 4.218 17 S -0.147 6.147 18 H 0.048 0.952 19 H 0.094 0.906 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.122 0.878 23 H 0.093 0.907 24 H 0.127 0.873 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.378 3.844 -14.450 15.141 hybrid contribution -0.827 0.230 0.233 0.889 sum -3.205 4.074 -14.217 15.132 Atomic orbital electron populations 1.22104 0.96258 1.01467 1.00237 1.19071 0.93436 0.95564 0.91487 0.95482 1.21274 1.30179 1.12186 0.90901 0.95412 1.25942 0.97618 1.00162 0.95380 1.70079 1.48127 1.42812 0.98564 0.85756 0.79069 0.79835 0.77135 1.18808 1.23186 1.16958 1.23928 0.88471 1.01872 0.98433 0.90515 1.22760 1.01479 1.00615 0.91372 1.22276 0.90887 1.03692 0.98932 1.24095 1.01133 1.05719 0.90864 1.88373 1.15838 1.96731 1.13749 0.95152 0.90635 0.92765 0.92766 0.87783 0.90651 0.87293 0.90247 0.88401 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 8.48 71.98 0.61 -4.95 15 2 C 0.02 1.12 1.50 -11.54 -0.02 1.10 15 3 H 0.03 1.30 7.20 -2.39 -0.02 1.28 15 4 C -0.51 -29.69 8.62 25.60 0.22 -29.47 15 5 H 0.03 1.85 7.86 -2.91 -0.02 1.82 15 6 C 0.00 0.29 5.45 84.66 0.46 0.76 15 7 N -0.95 -62.03 13.96 21.45 0.30 -61.73 15 8 Si 0.96 45.92 24.37 68.60 1.67 47.60 15 9 H -0.26 -11.76 6.87 99.48 0.68 -11.07 15 10 H -0.30 -14.75 7.11 99.48 0.71 -14.04 15 11 H -0.25 -10.87 6.53 99.48 0.65 -10.22 15 12 C 0.00 0.04 2.68 31.33 0.08 0.13 15 13 H 0.08 3.07 8.14 -2.39 -0.02 3.05 15 14 C -0.12 -3.31 5.04 31.62 0.16 -3.15 15 15 C -0.12 -2.56 6.38 31.31 0.20 -2.36 15 16 C -0.07 -1.84 7.34 72.42 0.53 -1.30 15 17 S -0.37 -15.36 22.10 -56.49 -1.25 -16.60 15 18 H 0.03 1.25 3.27 -2.39 -0.01 1.24 15 19 H 0.07 2.29 7.16 -2.39 -0.02 2.27 15 20 H 0.05 2.08 8.14 -2.38 -0.02 2.06 15 21 H 0.26 16.03 8.31 -92.71 -0.77 15.26 15 22 H 0.10 2.29 7.80 -2.39 -0.02 2.27 15 23 H 0.07 2.04 8.08 -2.39 -0.02 2.02 15 24 H 0.11 1.65 8.14 -2.38 -0.02 1.63 15 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 Total: -1.00 -70.31 224.95 4.02 -66.29 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.05 Total: 3.69 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 2.25 Total: -39.24 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.30 Total: -61.73 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.60 kcal Atomic # 16 Polarization: -15.36 SS G_CDS: -1.25 Total: -16.60 kcal Total: -70.31 4.02 -66.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479486.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.726 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds