Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47127 * 2 1 4 4 C 1.50700 * 109.47233 * 240.00771 * 2 1 3 5 5 H 1.07999 * 119.99821 * 268.14528 * 4 2 1 6 6 C 1.37870 * 120.00465 * 88.14463 * 4 2 1 7 7 N 1.31516 * 120.00322 * 353.50725 * 6 4 2 8 8 Si 1.86802 * 120.00327 * 173.50431 * 6 4 2 9 9 H 1.48499 * 109.47138 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47411 * 239.99956 * 8 6 4 11 11 H 1.48507 * 109.47154 * 119.99666 * 8 6 4 12 12 C 1.52994 * 109.47308 * 120.00381 * 2 1 3 13 13 H 1.08997 * 110.35708 * 64.13356 * 12 2 1 14 14 C 1.54276 * 110.40013 * 301.68205 * 12 2 1 15 15 C 1.53855 * 108.92344 * 213.25212 * 14 12 2 16 16 C 1.55134 * 106.90163 * 47.25827 * 15 14 12 17 17 S 1.83097 * 110.40211 * 186.45511 * 12 2 1 18 18 H 1.09001 * 109.47466 * 306.59152 * 1 2 3 19 19 H 1.09006 * 109.47223 * 66.59506 * 1 2 3 20 20 H 1.09002 * 109.46820 * 186.58847 * 1 2 3 21 21 H 0.97004 * 119.99223 * 354.75705 * 7 6 4 22 22 H 1.08999 * 109.60812 * 333.17514 * 14 12 2 23 23 H 1.09004 * 109.60850 * 93.33761 * 14 12 2 24 24 H 1.08997 * 109.97892 * 287.89529 * 15 14 12 25 25 H 1.09007 * 110.00404 * 166.63619 * 15 14 12 26 26 H 1.09005 * 110.86037 * 199.70071 * 16 15 14 27 27 H 1.09003 * 110.85880 * 76.05790 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.2409 -1.7693 -1.1954 6 6 2.2257 -0.0081 -2.4012 7 7 1.8527 1.2504 -2.4825 8 14 3.0177 -0.8442 -3.8720 9 1 3.3430 -2.2511 -3.5257 10 1 4.2631 -0.1238 -4.2396 11 1 2.0760 -0.8226 -5.0201 12 6 2.0400 -0.7213 1.2491 13 1 1.7461 -1.7707 1.2276 14 6 1.5033 -0.0358 2.5228 15 6 2.5603 -0.1513 3.6347 16 6 3.9194 0.2592 3.0094 17 16 3.8605 -0.5709 1.3745 18 1 -0.3634 0.6126 0.8251 19 1 -0.3634 0.4082 -0.9432 20 1 -0.3633 -1.0209 0.1179 21 1 1.3733 1.6626 -1.7467 22 1 1.3033 1.0155 2.3157 23 1 0.5826 -0.5249 2.8411 24 1 2.6113 -1.1788 3.9949 25 1 2.3111 0.5194 4.4572 26 1 4.7505 -0.1170 3.6060 27 1 3.9822 1.3412 2.8933 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479487.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = -46.209743 kcal Electronic energy + Delta-G solvation = -9834.040166 eV Core-core repulsion = 8102.114220 eV Total energy + Delta-G solvation = -1731.925946 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.17074 -35.65732 -32.87751 -28.87767 -27.10534 -25.51963 -22.60433 -21.17657 -18.83212 -17.65842 -16.28829 -15.67779 -15.63243 -14.90248 -14.65774 -13.95775 -13.52538 -13.25501 -13.01809 -12.59173 -12.47522 -12.25414 -11.98643 -11.93914 -11.76847 -11.35146 -10.68284 -10.54605 -10.30436 -8.56185 -8.50042 -6.23535 1.08423 1.49984 1.58905 1.74706 1.75652 2.57586 3.24948 3.74552 3.83610 4.05015 4.16545 4.40841 4.56076 4.63335 4.71428 4.83790 4.90837 4.92824 4.99969 5.03116 5.23292 5.42671 5.65527 6.10913 6.28303 6.70653 7.52319 8.84504 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.053053 B = 0.013806 C = 0.012002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.647058 B = 2027.654101 C = 2332.407905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.037 3.963 3 H 0.009 0.991 4 C -0.585 4.585 5 H 0.032 0.968 6 C -0.027 4.027 7 N -0.940 5.940 8 Si 1.107 2.893 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.278 1.278 12 C -0.003 4.003 13 H 0.075 0.925 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.070 4.070 17 S -0.364 6.364 18 H 0.051 0.949 19 H 0.022 0.978 20 H 0.046 0.954 21 H 0.260 0.740 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 -2.428 11.655 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.017 3.983 3 H 0.028 0.972 4 C -0.624 4.624 5 H 0.051 0.949 6 C -0.225 4.225 7 N -0.578 5.578 8 Si 0.931 3.069 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.204 1.204 12 C -0.132 4.132 13 H 0.093 0.907 14 C -0.164 4.164 15 C -0.154 4.154 16 C -0.217 4.217 17 S -0.136 6.136 18 H 0.070 0.930 19 H 0.041 0.959 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.464 -2.517 9.400 9.840 hybrid contribution -1.405 0.151 1.832 2.314 sum 0.059 -2.365 11.232 11.478 Atomic orbital electron populations 1.21806 0.97382 0.99995 0.99052 1.18944 0.92707 0.94777 0.91912 0.97240 1.22119 1.47001 0.95906 0.97334 0.94926 1.26924 0.96318 0.95790 1.03516 1.70829 1.38478 1.13278 1.35174 0.83057 0.76161 0.74636 0.73073 1.20407 1.20872 1.20397 1.23768 0.89097 1.01768 0.98541 0.90668 1.22503 1.00320 1.01136 0.92460 1.22524 0.91103 1.03635 0.98096 1.24338 1.02159 1.02304 0.92939 1.87991 1.15369 1.80172 1.30109 0.93036 0.95862 0.93530 0.93009 0.91705 0.88541 0.89821 0.87283 0.86521 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.66 71.98 0.62 -4.78 15 2 C 0.04 1.82 1.38 -11.54 -0.02 1.81 15 3 H 0.01 0.52 6.99 -2.39 -0.02 0.51 15 4 C -0.59 -33.44 7.80 25.60 0.20 -33.24 15 5 H 0.03 1.91 7.82 -2.91 -0.02 1.89 15 6 C -0.03 -1.61 5.45 84.65 0.46 -1.15 15 7 N -0.94 -58.37 13.56 21.44 0.29 -58.08 15 8 Si 1.11 53.15 29.91 68.60 2.05 55.20 15 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 15 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 12 C 0.00 -0.14 2.80 31.02 0.09 -0.05 15 13 H 0.07 3.15 8.14 -2.39 -0.02 3.14 15 14 C -0.13 -3.80 4.89 31.32 0.15 -3.65 15 15 C -0.12 -2.75 6.46 31.61 0.20 -2.54 15 16 C -0.07 -1.98 7.38 72.71 0.54 -1.45 15 17 S -0.36 -15.35 22.22 -56.49 -1.26 -16.60 15 18 H 0.05 1.90 7.31 -2.39 -0.02 1.89 15 19 H 0.02 1.11 7.80 -2.38 -0.02 1.09 15 20 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.26 16.12 6.45 -92.71 -0.60 15.52 15 22 H 0.06 2.06 7.63 -2.39 -0.02 2.04 15 23 H 0.10 2.49 8.14 -2.38 -0.02 2.47 15 24 H 0.08 1.84 8.14 -2.39 -0.02 1.83 15 25 H 0.11 1.91 8.14 -2.38 -0.02 1.89 15 26 H 0.12 2.74 8.14 -2.38 -0.02 2.72 15 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -66.61 232.80 4.63 -61.98 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.29 Total: 2.55 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 2.25 Total: -45.05 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.29 Total: -58.08 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.05 Total: 55.20 kcal Atomic # 16 Polarization: -15.35 SS G_CDS: -1.26 Total: -16.60 kcal Total: -66.61 4.63 -61.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479487.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.770 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds