Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47122 * 2 1 4 4 C 1.50698 * 109.47006 * 120.00188 * 2 1 3 5 5 H 1.08001 * 120.00375 * 28.33329 * 4 2 1 6 6 C 1.37880 * 120.00125 * 208.33376 * 4 2 1 7 7 N 1.31521 * 119.99866 * 353.38527 * 6 4 2 8 8 Si 1.86800 * 120.00182 * 173.38210 * 6 4 2 9 9 H 1.48495 * 109.46880 * 60.00187 * 8 6 4 10 10 H 1.48507 * 109.46967 * 300.00202 * 8 6 4 11 11 H 1.48497 * 109.47246 * 180.02562 * 8 6 4 12 12 C 1.52999 * 109.47301 * 239.99983 * 2 1 3 13 13 H 1.09006 * 110.70243 * 188.31679 * 12 2 1 14 14 C 1.54265 * 110.78742 * 65.00150 * 12 2 1 15 15 C 1.52330 * 112.58984 * 217.19921 * 14 12 2 16 16 C 1.54266 * 112.58609 * 0.02562 * 15 14 12 17 17 S 1.83954 * 110.78667 * 311.84440 * 12 2 1 18 18 H 1.09008 * 109.47080 * 66.54394 * 1 2 3 19 19 H 1.08998 * 109.47426 * 186.54451 * 1 2 3 20 20 H 1.09000 * 109.47459 * 306.54680 * 1 2 3 21 21 H 0.97001 * 119.99785 * 354.87199 * 7 6 4 22 22 H 1.09000 * 108.86283 * 338.01987 * 14 12 2 23 23 H 1.08995 * 108.86693 * 96.37885 * 14 12 2 24 24 H 1.09001 * 108.86675 * 120.81331 * 15 14 12 25 25 H 1.08989 * 108.87181 * 239.32489 * 15 14 12 26 26 H 1.09003 * 110.78326 * 142.80045 * 16 15 14 27 27 H 1.09004 * 110.78466 * 266.25403 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 1.4361 -1.4867 1.6871 6 6 3.2529 -0.3695 1.7733 7 7 4.0367 0.4809 1.1470 8 14 3.7935 -1.1154 3.3984 9 1 3.8594 -2.5931 3.2672 10 1 2.8167 -0.7555 4.4575 11 1 5.1339 -0.5901 3.7627 12 6 2.0400 -0.7212 -1.2492 13 1 3.1197 -0.8625 -1.1988 14 6 1.6479 0.0511 -2.5258 15 6 1.2801 -0.8734 -3.6792 16 6 1.3855 -2.3650 -3.2999 17 16 1.1759 -2.3298 -1.4729 18 1 -0.3634 0.4091 -0.9428 19 1 -0.3634 -1.0209 0.1171 20 1 -0.3634 0.6119 0.8256 21 1 3.7905 0.8110 0.2688 22 1 0.7951 0.6920 -2.3019 23 1 2.4861 0.6779 -2.8299 24 1 0.2571 -0.6604 -3.9893 25 1 1.9497 -0.6762 -4.5163 26 1 0.5885 -2.9409 -3.7701 27 1 2.3635 -2.7644 -3.5689 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260479490.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = -25.651529 kcal Electronic energy + Delta-G solvation = -9894.077656 eV Core-core repulsion = 8163.043182 eV Total energy + Delta-G solvation = -1731.034475 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.50082 -33.86513 -31.09242 -27.56054 -24.96905 -24.13913 -20.88873 -19.24289 -16.81275 -15.82504 -14.88919 -14.07851 -13.69116 -13.61450 -13.20251 -12.38174 -11.81445 -11.31657 -11.20322 -10.91846 -10.76219 -10.64998 -10.31764 -10.08905 -9.81919 -9.69629 -8.96021 -8.43582 -8.32316 -6.84870 -6.34665 -4.05460 2.63209 3.25856 3.47223 3.48704 3.67023 4.55634 5.02167 5.11875 5.31095 5.48961 5.71057 5.77881 5.93685 6.13205 6.20617 6.38500 6.43930 6.48529 6.63497 6.91364 6.97387 7.41086 7.45411 8.22523 8.48144 8.87912 9.65313 11.03082 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.056944 B = 0.013139 C = 0.012778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.593095 B = 2130.562622 C = 2190.704097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.039 3.961 3 H 0.043 0.957 4 C -0.584 4.584 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 1.064 2.936 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.283 1.283 12 C -0.005 4.005 13 H 0.083 0.917 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.086 4.086 17 S -0.288 6.288 18 H 0.028 0.972 19 H 0.054 0.946 20 H 0.038 0.962 21 H 0.268 0.732 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -1.927 -7.401 8.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.020 3.980 3 H 0.061 0.939 4 C -0.622 4.622 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.548 5.548 8 Si 0.892 3.108 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.209 1.209 12 C -0.134 4.134 13 H 0.101 0.899 14 C -0.175 4.175 15 C -0.157 4.157 16 C -0.235 4.235 17 S -0.061 6.061 18 H 0.047 0.953 19 H 0.073 0.927 20 H 0.057 0.943 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.489 -2.681 -5.476 7.025 hybrid contribution -0.589 0.667 -2.054 2.239 sum -4.078 -2.014 -7.530 8.797 Atomic orbital electron populations 1.21824 0.97918 1.00869 0.98175 1.18801 0.92215 0.95894 0.91140 0.93933 1.21911 1.05959 1.22625 1.11740 0.93064 1.25823 0.93257 0.95447 1.03791 1.70823 1.38589 1.30003 1.15418 0.83616 0.76184 0.75856 0.75123 1.21366 1.21435 1.20869 1.24445 1.00837 0.90416 0.97694 0.89851 1.22324 1.01962 0.99139 0.94028 1.21942 1.01872 0.93150 0.98763 1.24063 1.04008 0.98695 0.96708 1.87923 1.77356 1.35260 1.05594 0.95278 0.92748 0.94314 0.92119 0.90860 0.91899 0.91615 0.92020 0.89027 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.47 37.15 0.31 -2.54 15 2 C 0.04 0.97 1.73 -91.78 -0.16 0.81 15 3 H 0.04 1.12 6.98 -51.93 -0.36 0.76 15 4 C -0.58 -16.34 8.02 -34.44 -0.28 -16.62 15 5 H 0.05 1.48 7.82 -52.49 -0.41 1.07 15 6 C 0.02 0.59 5.45 -17.82 -0.10 0.49 15 7 N -0.91 -27.09 13.56 55.43 0.75 -26.34 15 8 Si 1.06 25.49 29.91 -169.99 -5.08 20.40 15 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 12 C -0.01 -0.11 2.90 -26.07 -0.08 -0.19 15 13 H 0.08 2.07 7.92 -51.93 -0.41 1.66 15 14 C -0.13 -2.42 5.75 -26.41 -0.15 -2.57 15 15 C -0.12 -1.77 6.30 -26.41 -0.17 -1.94 15 16 C -0.09 -1.37 7.46 37.82 0.28 -1.08 15 17 S -0.29 -6.04 20.65 -107.50 -2.22 -8.26 15 18 H 0.03 0.56 6.25 -51.92 -0.32 0.24 15 19 H 0.05 1.22 6.95 -51.93 -0.36 0.86 15 20 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.27 7.81 6.54 -40.82 -0.27 7.55 15 22 H 0.07 1.29 6.00 -51.93 -0.31 0.98 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.06 0.80 8.14 -51.94 -0.42 0.38 15 26 H 0.09 1.26 8.14 -51.93 -0.42 0.83 15 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 228.83 15.07 3.45 3.45 Total: -1.00 -29.46 228.83 -7.21 -36.67 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -3.78 Total: -2.29 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -0.33 Total: -23.63 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.75 Total: -26.34 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -2.22 Total: -8.26 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.46 -7.21 -36.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479490.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.019 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds