Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47122 * 2 1 4 4 C 1.50698 * 109.47006 * 120.00188 * 2 1 3 5 5 H 1.08001 * 120.00375 * 28.33329 * 4 2 1 6 6 C 1.37880 * 120.00125 * 208.33376 * 4 2 1 7 7 N 1.31521 * 119.99866 * 353.38527 * 6 4 2 8 8 Si 1.86800 * 120.00182 * 173.38210 * 6 4 2 9 9 H 1.48495 * 109.46880 * 60.00187 * 8 6 4 10 10 H 1.48507 * 109.46967 * 300.00202 * 8 6 4 11 11 H 1.48497 * 109.47246 * 180.02562 * 8 6 4 12 12 C 1.52999 * 109.47301 * 239.99983 * 2 1 3 13 13 H 1.09006 * 110.70243 * 188.31679 * 12 2 1 14 14 C 1.54265 * 110.78742 * 65.00150 * 12 2 1 15 15 C 1.52330 * 112.58984 * 217.19921 * 14 12 2 16 16 C 1.54266 * 112.58609 * 0.02562 * 15 14 12 17 17 S 1.83954 * 110.78667 * 311.84440 * 12 2 1 18 18 H 1.09008 * 109.47080 * 66.54394 * 1 2 3 19 19 H 1.08998 * 109.47426 * 186.54451 * 1 2 3 20 20 H 1.09000 * 109.47459 * 306.54680 * 1 2 3 21 21 H 0.97001 * 119.99785 * 354.87199 * 7 6 4 22 22 H 1.09000 * 108.86283 * 338.01987 * 14 12 2 23 23 H 1.08995 * 108.86693 * 96.37885 * 14 12 2 24 24 H 1.09001 * 108.86675 * 120.81331 * 15 14 12 25 25 H 1.08989 * 108.87181 * 239.32489 * 15 14 12 26 26 H 1.09003 * 110.78326 * 142.80045 * 16 15 14 27 27 H 1.09004 * 110.78466 * 266.25403 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 1.4361 -1.4867 1.6871 6 6 3.2529 -0.3695 1.7733 7 7 4.0367 0.4809 1.1470 8 14 3.7935 -1.1154 3.3984 9 1 3.8594 -2.5931 3.2672 10 1 2.8167 -0.7555 4.4575 11 1 5.1339 -0.5901 3.7627 12 6 2.0400 -0.7212 -1.2492 13 1 3.1197 -0.8625 -1.1988 14 6 1.6479 0.0511 -2.5258 15 6 1.2801 -0.8734 -3.6792 16 6 1.3855 -2.3650 -3.2999 17 16 1.1759 -2.3298 -1.4729 18 1 -0.3634 0.4091 -0.9428 19 1 -0.3634 -1.0209 0.1171 20 1 -0.3634 0.6119 0.8256 21 1 3.7905 0.8110 0.2688 22 1 0.7951 0.6920 -2.3019 23 1 2.4861 0.6779 -2.8299 24 1 0.2571 -0.6604 -3.9893 25 1 1.9497 -0.6762 -4.5163 26 1 0.5885 -2.9409 -3.7701 27 1 2.3635 -2.7644 -3.5689 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479490.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = -42.431350 kcal Electronic energy + Delta-G solvation = -9894.805284 eV Core-core repulsion = 8163.043182 eV Total energy + Delta-G solvation = -1731.762102 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.18854 -35.57511 -33.02828 -29.11687 -26.83705 -25.91413 -22.60474 -20.83245 -18.89038 -17.36282 -16.40422 -15.94464 -15.64023 -15.10954 -14.82461 -13.90102 -13.65369 -12.97598 -12.81795 -12.63607 -12.47984 -12.27266 -12.00553 -11.95554 -11.61329 -11.23130 -10.73418 -10.45830 -10.37888 -8.60396 -8.51421 -6.29866 1.13569 1.51448 1.58407 1.67316 1.77915 2.56455 3.16929 3.68141 3.91334 4.13585 4.28988 4.39527 4.53765 4.60050 4.71211 4.75200 4.92105 4.98845 5.03948 5.19214 5.28246 5.50854 5.57814 6.10346 6.23979 6.66166 7.46686 8.79078 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.056944 B = 0.013139 C = 0.012778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.593095 B = 2130.562622 C = 2190.704097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.034 3.966 3 H 0.019 0.981 4 C -0.593 4.593 5 H 0.036 0.964 6 C -0.029 4.029 7 N -0.936 5.936 8 Si 1.106 2.894 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.000 4.000 13 H 0.045 0.955 14 C -0.131 4.131 15 C -0.114 4.114 16 C -0.066 4.066 17 S -0.346 6.346 18 H 0.056 0.944 19 H 0.047 0.953 20 H 0.035 0.965 21 H 0.259 0.741 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 -2.371 -8.792 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.014 3.986 3 H 0.037 0.963 4 C -0.631 4.631 5 H 0.054 0.946 6 C -0.227 4.227 7 N -0.574 5.574 8 Si 0.929 3.071 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.208 1.208 12 C -0.129 4.129 13 H 0.064 0.936 14 C -0.170 4.170 15 C -0.153 4.153 16 C -0.214 4.214 17 S -0.119 6.119 18 H 0.074 0.926 19 H 0.066 0.934 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.139 0.861 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.282 -3.124 -6.879 8.684 hybrid contribution -0.379 0.774 -1.691 1.898 sum -4.660 -2.350 -8.571 10.035 Atomic orbital electron populations 1.21686 0.95776 1.00589 0.99580 1.18765 0.93979 0.94405 0.91426 0.96324 1.22182 1.05720 1.22179 1.13017 0.94578 1.27084 0.93638 0.95458 1.06509 1.70919 1.39316 1.31612 1.15512 0.83068 0.76171 0.75655 0.72239 1.20353 1.19704 1.20766 1.24046 0.98458 0.91572 0.98868 0.93623 1.22299 1.02279 0.99422 0.93015 1.21922 1.03981 0.91483 0.97921 1.24237 1.05703 1.00063 0.91389 1.88008 1.76927 1.35052 1.11950 0.92556 0.93424 0.94576 0.93055 0.90503 0.91341 0.89409 0.89148 0.86056 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.47 71.98 0.61 -4.54 15 2 C 0.03 1.70 1.73 -11.54 -0.02 1.68 15 3 H 0.02 1.01 6.98 -2.39 -0.02 1.00 15 4 C -0.59 -33.87 8.02 25.60 0.21 -33.67 15 5 H 0.04 2.12 7.82 -2.91 -0.02 2.10 15 6 C -0.03 -1.66 5.45 84.65 0.46 -1.20 15 7 N -0.94 -56.95 13.56 21.45 0.29 -56.66 15 8 Si 1.11 51.79 29.91 68.60 2.05 53.84 15 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 12 C 0.00 -0.02 2.90 31.02 0.09 0.07 15 13 H 0.05 2.33 7.92 -2.38 -0.02 2.31 15 14 C -0.13 -4.42 5.75 30.80 0.18 -4.24 15 15 C -0.11 -2.94 6.30 30.80 0.19 -2.75 15 16 C -0.07 -1.85 7.46 72.41 0.54 -1.31 15 17 S -0.35 -14.17 20.65 -56.49 -1.17 -15.34 15 18 H 0.06 2.09 6.25 -2.38 -0.01 2.08 15 19 H 0.05 2.12 6.95 -2.39 -0.02 2.10 15 20 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.26 15.69 6.54 -92.71 -0.61 15.08 15 22 H 0.08 2.53 6.00 -2.39 -0.01 2.51 15 23 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.12 2.75 8.14 -2.39 -0.02 2.73 15 27 H 0.09 2.31 8.14 -2.38 -0.02 2.29 15 Total: -1.00 -64.48 228.83 4.73 -59.75 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.29 Total: 4.36 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 2.26 Total: -45.96 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.29 Total: -56.66 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Atomic # 16 Polarization: -14.17 SS G_CDS: -1.17 Total: -15.34 kcal Total: -64.48 4.73 -59.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479490.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.322 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds