Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 H 1.09006 * 109.46951 * 305.51637 * 3 2 1 5 5 C 1.50697 * 109.47462 * 65.51799 * 3 2 1 6 6 H 1.08004 * 119.99908 * 55.37451 * 5 3 2 7 7 C 1.37869 * 120.00322 * 235.37841 * 5 3 2 8 8 N 1.31509 * 120.00105 * 5.73008 * 7 5 3 9 9 Si 1.86801 * 120.00135 * 185.72708 * 7 5 3 10 10 H 1.48497 * 109.47154 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47170 * 119.99929 * 9 7 5 12 12 H 1.48504 * 109.47104 * 239.99855 * 9 7 5 13 13 C 1.52998 * 109.47126 * 185.52055 * 3 2 1 14 14 C 1.55891 * 110.82489 * 59.99840 * 13 3 2 15 15 S 1.83086 * 82.43925 * 142.74261 * 14 13 3 16 16 C 1.55884 * 110.82655 * 173.65205 * 13 3 2 17 17 H 1.08998 * 109.46837 * 294.42212 * 1 2 3 18 18 H 1.08994 * 109.46818 * 54.41696 * 1 2 3 19 19 H 1.08997 * 109.46981 * 174.41932 * 1 2 3 20 20 H 1.09000 * 109.46964 * 239.99996 * 2 1 3 21 21 H 1.08995 * 109.46947 * 119.99863 * 2 1 3 22 22 H 0.97003 * 120.00554 * 180.02562 * 8 7 5 23 23 H 1.09009 * 110.39775 * 296.82550 * 13 3 2 24 24 H 1.08999 * 114.37704 * 29.34656 * 14 13 3 25 25 H 1.08996 * 114.37678 * 256.13954 * 14 13 3 26 26 H 1.08998 * 114.38255 * 103.86028 * 16 13 3 27 27 H 1.08998 * 114.37660 * 330.65023 * 16 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 -0.8365 5 6 1.6524 2.1124 1.2930 6 1 1.9377 1.6710 2.2366 7 6 0.9335 3.2887 1.2716 8 7 0.4891 3.7669 0.1300 9 14 0.5908 4.2030 2.8640 10 1 1.1940 3.4614 4.0003 11 1 1.1816 5.5634 2.7907 12 1 -0.8764 4.3108 3.0670 13 6 3.5637 1.4447 -0.1388 14 6 4.0001 0.7578 -1.4684 15 16 5.2696 2.0770 -1.4508 16 6 4.1031 2.8980 -0.3030 17 1 -0.3633 0.4249 0.9357 18 1 -0.3633 0.5980 -0.8357 19 1 -0.3633 -1.0228 -0.0999 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 -0.0164 4.5947 0.1148 23 1 4.0241 0.9552 0.7195 24 1 3.2747 0.8421 -2.2775 25 1 4.3967 -0.2499 -1.3450 26 1 4.5680 3.3094 0.5930 27 1 3.4067 3.5847 -0.7841 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485603.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = -3.914929 kcal Electronic energy + Delta-G solvation = -9932.214298 eV Core-core repulsion = 8202.122394 eV Total energy + Delta-G solvation = -1730.091905 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.64748 -32.63102 -31.52158 -26.89079 -26.11561 -23.63379 -20.51177 -18.84897 -16.66386 -15.71831 -14.59204 -14.25766 -13.35983 -12.82800 -12.70498 -12.31307 -11.89419 -11.64136 -11.01413 -10.99007 -10.94247 -10.70473 -10.39776 -10.11018 -9.92813 -9.06465 -8.97421 -8.60136 -8.30982 -7.15422 -6.06801 -4.07703 2.45110 2.82278 3.25326 3.35161 3.38464 4.39147 5.19653 5.44127 5.50122 5.77467 6.03818 6.12378 6.24520 6.30145 6.46904 6.53277 6.81046 6.86134 7.08813 7.10996 7.34567 7.52038 7.78888 7.87968 8.38886 9.02976 9.54823 11.01618 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.038164 B = 0.015644 C = 0.012279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.506950 B = 1789.426179 C = 2279.715938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C 0.033 3.967 4 H 0.072 0.928 5 C -0.504 4.504 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C -0.100 4.100 14 C -0.051 4.051 15 S -0.400 6.400 16 C -0.010 4.010 17 H 0.058 0.942 18 H 0.046 0.954 19 H 0.022 0.978 20 H 0.028 0.972 21 H 0.039 0.961 22 H 0.260 0.740 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -3.739 -0.832 4.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C 0.013 3.987 4 H 0.091 0.909 5 C -0.542 4.542 6 H 0.070 0.930 7 C -0.132 4.132 8 N -0.529 5.529 9 Si 0.710 3.290 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.120 4.120 14 C -0.199 4.199 15 S -0.175 6.175 16 C -0.157 4.157 17 H 0.077 0.923 18 H 0.065 0.935 19 H 0.041 0.959 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.842 -3.330 -1.467 5.292 hybrid contribution -1.204 0.423 1.330 1.843 sum 2.638 -2.907 -0.137 3.928 Atomic orbital electron populations 1.21520 0.96733 0.97811 1.02534 1.21575 0.95642 0.99356 0.98074 1.19178 0.87758 0.92073 0.99689 0.90942 1.21018 1.34172 1.06893 0.92133 0.92973 1.24915 0.95194 0.97403 0.95728 1.69895 1.36921 1.21341 1.24734 0.86702 0.77988 0.79981 0.84364 1.19781 1.20995 1.21119 1.23467 1.02625 0.91375 0.94549 1.24851 0.95281 0.97707 1.02069 1.88030 1.33434 1.28302 1.67749 1.24651 0.94083 0.99835 0.97165 0.92257 0.93462 0.95905 0.95318 0.94218 0.92968 0.90255 0.88410 0.88828 0.88747 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.64 37.16 0.36 -2.23 15 2 C -0.11 -2.18 5.26 -26.73 -0.14 -2.32 15 3 C 0.03 0.75 1.69 -91.78 -0.16 0.60 15 4 H 0.07 1.84 6.92 -51.93 -0.36 1.48 15 5 C -0.50 -12.63 6.97 -34.44 -0.24 -12.87 15 6 H 0.05 1.33 7.82 -52.48 -0.41 0.92 15 7 C 0.07 1.80 5.45 -17.82 -0.10 1.70 15 8 N -0.89 -24.01 12.62 55.43 0.70 -23.31 15 9 Si 0.88 20.35 29.54 -169.99 -5.02 15.33 15 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 13 C -0.10 -2.01 2.34 -87.54 -0.21 -2.22 15 14 C -0.05 -0.90 7.26 38.70 0.28 -0.62 15 15 S -0.40 -7.73 24.06 -107.50 -2.59 -10.32 15 16 C -0.01 -0.20 8.07 38.70 0.31 0.11 15 17 H 0.06 1.29 7.58 -51.93 -0.39 0.90 15 18 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 19 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 15 20 H 0.03 0.52 7.10 -51.93 -0.37 0.15 15 21 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 15 23 H 0.08 1.60 8.14 -51.92 -0.42 1.17 15 24 H 0.10 1.71 8.10 -51.93 -0.42 1.29 15 25 H 0.09 1.47 8.14 -51.93 -0.42 1.04 15 26 H 0.09 1.84 8.14 -51.93 -0.42 1.42 15 27 H 0.11 2.41 8.10 -51.93 -0.42 1.99 15 LS Contribution 237.02 15.07 3.57 3.57 Total: -1.00 -25.87 237.02 -7.27 -33.14 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.04 Total: -0.57 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 0.11 Total: -17.85 kcal Atomic # 7 Polarization: -24.01 SS G_CDS: 0.70 Total: -23.31 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -2.59 Total: -10.32 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -25.87 -7.27 -33.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485603.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.227 kcal (2) G-P(sol) polarization free energy of solvation -25.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds