Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 H 1.09006 * 109.46951 * 305.51637 * 3 2 1 5 5 C 1.50697 * 109.47462 * 65.51799 * 3 2 1 6 6 H 1.08004 * 119.99908 * 55.37451 * 5 3 2 7 7 C 1.37869 * 120.00322 * 235.37841 * 5 3 2 8 8 N 1.31509 * 120.00105 * 5.73008 * 7 5 3 9 9 Si 1.86801 * 120.00135 * 185.72708 * 7 5 3 10 10 H 1.48497 * 109.47154 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47170 * 119.99929 * 9 7 5 12 12 H 1.48504 * 109.47104 * 239.99855 * 9 7 5 13 13 C 1.52998 * 109.47126 * 185.52055 * 3 2 1 14 14 C 1.55891 * 110.82489 * 59.99840 * 13 3 2 15 15 S 1.83086 * 82.43925 * 142.74261 * 14 13 3 16 16 C 1.55884 * 110.82655 * 173.65205 * 13 3 2 17 17 H 1.08998 * 109.46837 * 294.42212 * 1 2 3 18 18 H 1.08994 * 109.46818 * 54.41696 * 1 2 3 19 19 H 1.08997 * 109.46981 * 174.41932 * 1 2 3 20 20 H 1.09000 * 109.46964 * 239.99996 * 2 1 3 21 21 H 1.08995 * 109.46947 * 119.99863 * 2 1 3 22 22 H 0.97003 * 120.00554 * 180.02562 * 8 7 5 23 23 H 1.09009 * 110.39775 * 296.82550 * 13 3 2 24 24 H 1.08999 * 114.37704 * 29.34656 * 14 13 3 25 25 H 1.08996 * 114.37678 * 256.13954 * 14 13 3 26 26 H 1.08998 * 114.38255 * 103.86028 * 16 13 3 27 27 H 1.08998 * 114.37660 * 330.65023 * 16 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 -0.8365 5 6 1.6524 2.1124 1.2930 6 1 1.9377 1.6710 2.2366 7 6 0.9335 3.2887 1.2716 8 7 0.4891 3.7669 0.1300 9 14 0.5908 4.2030 2.8640 10 1 1.1940 3.4614 4.0003 11 1 1.1816 5.5634 2.7907 12 1 -0.8764 4.3108 3.0670 13 6 3.5637 1.4447 -0.1388 14 6 4.0001 0.7578 -1.4684 15 16 5.2696 2.0770 -1.4508 16 6 4.1031 2.8980 -0.3030 17 1 -0.3633 0.4249 0.9357 18 1 -0.3633 0.5980 -0.8357 19 1 -0.3633 -1.0228 -0.0999 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 -0.0164 4.5947 0.1148 23 1 4.0241 0.9552 0.7195 24 1 3.2747 0.8421 -2.2775 25 1 4.3967 -0.2499 -1.3450 26 1 4.5680 3.3094 0.5930 27 1 3.4067 3.5847 -0.7841 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485603.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = -16.644543 kcal Electronic energy + Delta-G solvation = -9932.766296 eV Core-core repulsion = 8202.122394 eV Total energy + Delta-G solvation = -1730.643902 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.33328 -34.43966 -33.26945 -28.67473 -27.69651 -25.46506 -22.14837 -20.54023 -18.59281 -17.26662 -16.45738 -15.91461 -15.06934 -14.44837 -14.41393 -13.84963 -13.61061 -13.37873 -12.84593 -12.76726 -12.51030 -12.32489 -12.20865 -11.83836 -11.56437 -10.86815 -10.80246 -10.51731 -9.96825 -8.69808 -8.04560 -6.08679 0.92884 1.26637 1.40297 1.46107 1.53574 2.47466 3.25208 3.87679 3.93567 4.20500 4.56449 4.60075 4.64475 4.71389 4.85352 4.91760 5.16052 5.24606 5.40413 5.45562 5.67719 5.77063 5.86921 6.00482 6.47779 7.07885 7.55271 9.03161 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.038164 B = 0.015644 C = 0.012279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.506950 B = 1789.426179 C = 2279.715938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.034 3.966 4 H 0.040 0.960 5 C -0.504 4.504 6 H 0.045 0.955 7 C 0.028 3.972 8 N -0.919 5.919 9 Si 0.930 3.070 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.287 1.287 13 C -0.097 4.097 14 C -0.035 4.035 15 S -0.400 6.400 16 C -0.016 4.016 17 H 0.034 0.966 18 H 0.030 0.970 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.258 0.742 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.097 0.903 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -5.053 -0.719 6.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.014 3.986 4 H 0.059 0.941 5 C -0.543 4.543 6 H 0.063 0.937 7 C -0.171 4.171 8 N -0.559 5.559 9 Si 0.758 3.242 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.214 1.214 13 C -0.117 4.117 14 C -0.183 4.183 15 S -0.175 6.175 16 C -0.164 4.164 17 H 0.054 0.946 18 H 0.049 0.951 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.142 0.858 26 H 0.116 0.884 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.478 -4.653 -1.347 6.597 hybrid contribution -1.389 0.789 1.279 2.046 sum 3.089 -3.864 -0.068 4.947 Atomic orbital electron populations 1.21459 0.96930 0.99266 1.00481 1.21527 0.95476 0.97822 0.99578 1.19090 0.89346 0.93053 0.97161 0.94119 1.21261 1.33273 1.06798 0.92935 0.93656 1.25448 0.95587 0.98323 0.97740 1.70004 1.38053 1.21660 1.26156 0.85930 0.77502 0.78924 0.81851 1.19339 1.21090 1.21361 1.23412 1.00661 0.91435 0.96224 1.24932 0.94438 0.98558 1.00385 1.88032 1.33329 1.28796 1.67361 1.24510 0.94355 0.99885 0.97617 0.94644 0.95126 0.92685 0.92693 0.93609 0.93311 0.89879 0.87997 0.85765 0.88395 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.64 71.98 0.69 -4.12 15 2 C -0.11 -4.03 5.26 30.60 0.16 -3.87 15 3 C 0.03 1.50 1.69 -11.54 -0.02 1.48 15 4 H 0.04 2.07 6.92 -2.38 -0.02 2.05 15 5 C -0.50 -25.13 6.97 25.60 0.18 -24.95 15 6 H 0.05 2.29 7.82 -2.91 -0.02 2.26 15 7 C 0.03 1.44 5.45 84.65 0.46 1.90 15 8 N -0.92 -50.34 12.62 21.44 0.27 -50.07 15 9 Si 0.93 41.88 29.54 68.60 2.03 43.91 15 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 12 H -0.29 -12.95 7.11 99.48 0.71 -12.25 15 13 C -0.10 -3.75 2.34 -8.80 -0.02 -3.77 15 14 C -0.04 -1.15 7.26 72.98 0.53 -0.62 15 15 S -0.40 -14.70 24.06 -56.49 -1.36 -16.06 15 16 C -0.02 -0.63 8.07 72.98 0.59 -0.05 15 17 H 0.03 1.51 7.58 -2.39 -0.02 1.49 15 18 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 19 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.05 1.80 7.10 -2.39 -0.02 1.78 15 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.26 13.69 8.31 -92.71 -0.77 12.92 15 23 H 0.08 3.15 8.14 -2.38 -0.02 3.13 15 24 H 0.10 3.27 8.10 -2.39 -0.02 3.25 15 25 H 0.12 3.33 8.14 -2.39 -0.02 3.31 15 26 H 0.10 3.79 8.14 -2.39 -0.02 3.77 15 27 H 0.08 3.80 8.10 -2.39 -0.02 3.78 15 Total: -1.00 -53.87 237.02 4.63 -49.24 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.12 Total: 6.98 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 2.57 Total: -33.99 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.27 Total: -50.07 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: -14.70 SS G_CDS: -1.36 Total: -16.06 kcal Total: -53.87 4.63 -49.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485603.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.596 kcal (2) G-P(sol) polarization free energy of solvation -53.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds