Wall clock time and date at job start Mon Mar 30 2020 01:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.70423 * 124.64983 * 2 1 4 4 C 1.75443 * 92.59543 * 180.02562 * 3 2 1 5 5 F 1.35098 * 124.56486 * 179.97438 * 4 3 2 6 6 C 1.32845 * 110.86516 * 359.71515 * 4 3 2 7 7 C 1.37531 * 124.64325 * 180.02562 * 2 1 3 8 8 C 1.41225 * 123.63913 * 359.96093 * 7 2 1 9 9 H 1.07997 * 120.00415 * 339.67120 * 8 7 2 10 10 C 1.39660 * 119.99603 * 159.39642 * 8 7 2 11 11 N 1.31077 * 120.00140 * 349.20977 * 10 8 7 12 12 Si 1.86803 * 119.99832 * 169.20309 * 10 8 7 13 13 H 1.48503 * 109.46849 * 60.00429 * 12 10 8 14 14 H 1.48505 * 109.47014 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47432 * 300.00183 * 12 10 8 16 16 H 1.08998 * 109.46597 * 269.96038 * 1 2 3 17 17 H 1.08994 * 109.46523 * 29.95657 * 1 2 3 18 18 H 1.08998 * 109.46964 * 149.95744 * 1 2 3 19 19 H 1.07999 * 123.44487 * 180.25208 * 6 4 3 20 20 H 0.97001 * 119.99933 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4760 1.4020 0.0000 4 6 3.9630 0.4709 -0.0008 5 9 5.2030 1.0070 -0.0016 6 6 3.7052 -0.8323 0.0052 7 6 2.2889 -1.1315 -0.0005 8 6 1.7663 -2.4435 -0.0003 9 1 0.7519 -2.6207 0.3252 10 6 2.5595 -3.5111 -0.4264 11 7 3.7042 -3.2803 -1.0219 12 14 1.9892 -5.2679 -0.1476 13 1 0.6941 -5.4839 -0.8415 14 1 3.0034 -6.2091 -0.6871 15 1 1.8171 -5.5074 1.3078 16 1 -0.3632 -0.0007 1.0277 17 1 -0.3632 0.8904 -0.5131 18 1 -0.3633 -0.8896 -0.5145 19 1 4.4737 -1.5911 0.0098 20 1 4.2553 -4.0218 -1.3175 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260505666.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:29 Heat of formation + Delta-G solvation = -35.994249 kcal Electronic energy + Delta-G solvation = -9136.428632 eV Core-core repulsion = 7145.652264 eV Total energy + Delta-G solvation = -1990.776368 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.021 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -47.84095 -36.41152 -32.84706 -30.35535 -27.20158 -23.75296 -21.36050 -19.09108 -16.90239 -15.96644 -15.44732 -14.68824 -14.39158 -13.31108 -12.99021 -12.52367 -12.11033 -11.62267 -11.32092 -11.21179 -10.68021 -10.46058 -10.25580 -9.90898 -9.48047 -9.10860 -7.25145 -7.16669 -6.78332 -4.38662 2.35629 2.58995 2.99057 3.04410 3.07318 3.62441 3.90239 3.96369 5.20709 5.74064 6.40186 6.52903 6.65258 6.93254 6.99950 7.15160 7.34431 7.46013 7.89900 8.33161 8.65363 8.83009 10.15800 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.050234 B = 0.015315 C = 0.011995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.262725 B = 1827.833416 C = 2333.813809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.396 4.396 3 S 0.033 5.967 4 C -0.056 4.056 5 F -0.133 7.133 6 C -0.114 4.114 7 C 0.104 3.896 8 C -0.432 4.432 9 H 0.083 0.917 10 C 0.072 3.928 11 N -0.810 5.810 12 Si 0.918 3.082 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.264 1.264 16 H 0.035 0.965 17 H 0.035 0.965 18 H 0.058 0.942 19 H 0.156 0.844 20 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 0.893 1.163 2.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.513 4.513 3 S 0.290 5.710 4 C -0.188 4.188 5 F -0.112 7.112 6 C -0.149 4.149 7 C 0.094 3.906 8 C -0.465 4.465 9 H 0.101 0.899 10 C -0.145 4.145 11 N -0.437 5.437 12 Si 0.743 3.257 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.189 1.189 16 H 0.054 0.946 17 H 0.054 0.946 18 H 0.077 0.923 19 H 0.174 0.826 20 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.594 2.302 1.047 2.989 hybrid contribution 0.501 -2.271 0.009 2.326 sum -1.092 0.031 1.057 1.520 Atomic orbital electron populations 1.19581 0.90078 1.00000 0.99129 1.22861 0.98161 0.93804 1.36492 1.81898 0.95228 1.11643 1.82258 1.21878 0.82895 0.95281 1.18782 1.91340 1.38138 1.86288 1.95461 1.22092 0.99599 0.92981 1.00220 1.17369 0.88368 0.93098 0.91721 1.19067 0.99765 0.89832 1.37877 0.89911 1.25964 0.94204 1.01966 0.92357 1.69815 1.10918 1.34414 1.28523 0.86200 0.79298 0.80439 0.79799 1.18921 1.20348 1.18853 0.94602 0.94629 0.92287 0.82640 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.61 9.92 36.01 0.36 -0.25 14 2 C -0.40 -9.73 6.39 -34.56 -0.22 -9.96 14 3 S 0.03 0.75 22.96 -107.50 -2.47 -1.72 14 4 C -0.06 -1.37 8.26 28.88 0.24 -1.13 14 5 F -0.13 -3.10 17.32 2.25 0.04 -3.06 14 6 C -0.11 -3.00 9.15 -38.86 -0.36 -3.36 14 7 C 0.10 2.78 5.67 -106.45 -0.60 2.17 14 8 C -0.43 -11.28 8.65 -37.92 -0.33 -11.61 14 9 H 0.08 2.06 7.27 -52.49 -0.38 1.68 14 10 C 0.07 1.78 5.38 -17.34 -0.09 1.68 14 11 N -0.81 -20.66 10.74 55.53 0.60 -20.07 14 12 Si 0.92 18.43 29.57 -169.99 -5.03 13.41 14 13 H -0.26 -5.24 7.11 56.52 0.40 -4.84 14 14 H -0.28 -5.47 7.11 56.52 0.40 -5.06 14 15 H -0.26 -5.25 7.11 56.52 0.40 -4.84 14 16 H 0.04 0.70 8.14 -51.93 -0.42 0.28 14 17 H 0.03 0.67 8.14 -51.93 -0.42 0.25 14 18 H 0.06 1.24 7.37 -51.93 -0.38 0.85 14 19 H 0.16 4.15 6.31 -52.49 -0.33 3.82 14 20 H 0.28 6.57 8.30 -40.82 -0.34 6.23 14 LS Contribution 200.87 15.07 3.03 3.03 Total: -1.00 -26.58 200.87 -5.91 -32.50 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -1.07 Total: -1.63 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -1.01 Total: -22.45 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.60 Total: -20.07 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.47 Total: -1.72 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -26.58 -5.91 -32.50 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505666.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.498 kcal (2) G-P(sol) polarization free energy of solvation -26.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds