Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47116 * 59.99536 * 9 7 5 11 11 H 1.48500 * 109.46585 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46730 * 299.99515 * 9 7 5 13 13 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 14 14 H 1.09001 * 113.40971 * 174.12702 * 13 2 1 15 15 C 1.55882 * 114.38081 * 307.81365 * 13 2 1 16 16 C 1.55879 * 102.95256 * 137.59505 * 15 13 2 17 17 S 1.83091 * 114.37690 * 40.49396 * 13 2 1 18 18 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 19 19 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 21 21 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 22 22 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 23 23 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 24 24 H 1.08997 * 110.82331 * 256.13226 * 15 13 2 25 25 H 1.09005 * 110.82038 * 19.05667 * 15 13 2 26 26 H 1.09001 * 114.38216 * 222.40721 * 16 15 13 27 27 H 1.08996 * 114.41540 * 89.19043 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 2.0920 1.9228 -5.1871 11 1 1.9939 -0.1374 -6.4620 12 1 0.0190 0.6704 -5.3090 13 6 2.0400 -0.7213 1.2493 14 1 3.1224 -0.8482 1.2645 15 6 1.4338 -0.1983 2.5868 16 6 1.1431 -1.5110 3.3756 17 16 1.0962 -2.2267 1.6910 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 3.1263 -0.7996 -1.2055 22 1 1.6053 -1.7198 -1.2951 23 1 2.9222 -1.8427 -4.7318 24 1 2.1522 0.4236 3.1208 25 1 0.5131 0.3561 2.4043 26 1 0.1850 -1.5208 3.8954 27 1 1.9727 -1.8605 3.9900 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511514.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -18.907947 kcal Electronic energy + Delta-G solvation = -9622.316689 eV Core-core repulsion = 7891.574638 eV Total energy + Delta-G solvation = -1730.742051 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.22060 -35.27672 -33.47939 -29.02150 -27.46290 -25.26379 -22.49190 -20.86301 -18.55189 -17.47698 -16.60226 -16.20486 -15.49167 -14.59969 -14.34511 -14.04654 -13.62553 -13.21104 -13.12027 -12.79208 -12.57458 -12.44003 -12.17316 -11.88758 -11.71540 -11.12543 -11.02435 -10.55625 -10.02548 -8.62339 -8.18421 -6.29167 0.83056 1.37204 1.39474 1.43027 1.50571 2.41288 3.14854 3.61286 3.67522 4.00393 4.25199 4.34051 4.48682 4.66857 4.80024 4.84563 4.92739 5.14047 5.26537 5.39307 5.49744 5.51219 5.78594 5.85032 6.24962 6.87284 7.39667 8.93640 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.083473 B = 0.009725 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.356524 B = 2878.351262 C = 3013.933670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.062 4.062 3 H 0.081 0.919 4 C 0.038 3.962 5 C -0.532 4.532 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.267 1.267 13 C -0.019 4.019 14 H 0.101 0.899 15 C -0.133 4.133 16 C -0.045 4.045 17 S -0.411 6.411 18 H 0.043 0.957 19 H 0.044 0.956 20 H 0.072 0.928 21 H -0.016 1.016 22 H -0.019 1.019 23 H 0.262 0.738 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 4.505 13.068 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 H 0.099 0.901 4 C 0.000 4.000 5 C -0.570 4.570 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.147 4.147 14 H 0.119 0.881 15 C -0.171 4.171 16 C -0.193 4.193 17 S -0.186 6.186 18 H 0.062 0.938 19 H 0.063 0.937 20 H 0.091 0.909 21 H 0.002 0.998 22 H -0.001 1.001 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.146 0.854 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.464 3.291 12.354 13.246 hybrid contribution 0.560 0.644 -0.784 1.159 sum -2.904 3.934 11.570 12.561 Atomic orbital electron populations 1.21747 0.94276 1.01412 1.00881 1.20899 0.96837 0.98713 0.91737 0.90084 1.18946 0.93867 0.94346 0.92807 1.21637 1.34679 1.08704 0.91944 0.91537 1.26021 0.95163 0.96067 1.02905 1.70124 1.40300 1.23098 1.24365 0.85505 0.78928 0.78827 0.77836 1.18781 1.21198 1.19204 1.24671 1.00094 0.91068 0.98905 0.88054 1.23526 1.03682 0.98494 0.91411 1.24774 1.07074 0.95005 0.92412 1.89056 1.74431 1.41187 1.13964 0.93759 0.93704 0.90913 0.99760 1.00084 0.92972 0.88116 0.87826 0.85425 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.20 71.98 0.59 -4.16 15 2 C -0.06 -2.53 2.51 -10.79 -0.03 -2.56 15 3 H 0.08 3.11 8.14 -2.39 -0.02 3.09 15 4 C 0.04 2.04 4.45 29.85 0.13 2.17 15 5 C -0.53 -30.49 8.41 25.60 0.22 -30.28 15 6 H 0.07 3.59 7.06 -2.91 -0.02 3.57 15 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 15 8 N -0.94 -59.17 13.29 21.45 0.28 -58.88 15 9 Si 0.96 45.01 29.54 68.60 2.03 47.04 15 10 H -0.26 -11.61 7.11 99.48 0.71 -10.91 15 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 15 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 13 C -0.02 -0.64 4.36 31.59 0.14 -0.51 15 14 H 0.10 3.46 8.14 -2.39 -0.02 3.44 15 15 C -0.13 -3.04 6.36 32.59 0.21 -2.84 15 16 C -0.05 -0.95 9.09 72.98 0.66 -0.29 15 17 S -0.41 -14.53 21.79 -56.49 -1.23 -15.76 15 18 H 0.04 1.78 6.95 -2.39 -0.02 1.77 15 19 H 0.04 1.84 6.78 -2.39 -0.02 1.83 15 20 H 0.07 2.15 6.15 -2.38 -0.01 2.14 15 21 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 15 22 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 15 23 H 0.26 15.56 8.31 -92.71 -0.77 14.79 15 24 H 0.10 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.10 2.27 5.91 -2.38 -0.01 2.26 15 26 H 0.13 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.12 2.05 8.14 -2.39 -0.02 2.03 15 Total: -1.00 -68.53 232.91 4.59 -63.93 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.13 Total: 1.92 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 2.38 Total: -38.26 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.28 Total: -58.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -14.53 SS G_CDS: -1.23 Total: -15.76 kcal Total: -68.53 4.59 -63.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511514.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.026 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds