Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 H 1.08999 * 112.49278 * 290.22592 * 13 2 1 15 15 C 1.53040 * 113.14626 * 60.00333 * 13 2 1 16 16 C 1.53044 * 89.86484 * 148.15214 * 15 13 2 17 17 S 1.81422 * 113.14714 * 160.40640 * 13 2 1 18 18 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 19 19 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 21 21 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 22 22 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 23 23 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 24 24 H 1.08997 * 113.15266 * 263.40618 * 15 13 2 25 25 H 1.09000 * 113.15087 * 32.90684 * 15 13 2 26 26 H 1.09000 * 113.14539 * 82.35933 * 16 15 13 27 27 H 1.08991 * 113.15371 * 211.80447 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 1 1.8508 -1.7944 -1.2176 15 6 1.5772 -0.0670 -2.5529 16 6 2.8770 -0.5066 -3.2307 17 16 3.7594 -0.3113 -1.6576 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5140 0.8899 21 1 3.1263 -0.7995 1.2057 22 1 1.6053 -1.7197 1.2953 23 1 2.9286 -2.0221 3.0617 24 1 0.6913 -0.5385 -2.9782 25 1 1.4784 1.0159 -2.4773 26 1 2.8497 -1.5383 -3.5813 27 1 3.2145 0.1868 -4.0010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511517.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -8.315563 kcal Electronic energy + Delta-G solvation = -9641.734957 eV Core-core repulsion = 7911.452227 eV Total energy + Delta-G solvation = -1730.282731 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.29441 -34.04195 -31.80027 -26.62145 -25.74953 -23.19094 -21.63317 -19.53656 -17.04440 -16.30859 -14.81970 -13.82011 -13.66441 -13.45989 -13.28323 -12.63398 -12.09773 -11.71432 -11.41710 -11.32229 -11.07361 -10.70642 -10.13801 -10.12880 -10.06103 -9.58197 -9.32955 -8.46859 -8.28555 -7.42034 -6.31064 -3.99605 2.14965 2.32568 3.45914 3.48415 3.66812 4.57644 4.59644 4.93010 5.23861 5.43423 5.46762 5.49990 5.71363 5.75420 5.96632 6.13591 6.16151 6.36501 6.78469 6.92369 6.99203 7.42225 7.55909 8.25536 8.50694 8.92966 9.72290 11.09297 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.068501 B = 0.010188 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.654491 B = 2747.537130 C = 2964.560089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.068 4.068 3 H 0.069 0.931 4 C 0.014 3.986 5 C -0.596 4.596 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.288 1.288 13 C -0.038 4.038 14 H 0.102 0.898 15 C -0.119 4.119 16 C -0.093 4.093 17 S -0.296 6.296 18 H 0.036 0.964 19 H 0.045 0.955 20 H 0.067 0.933 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.268 0.732 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 2.238 -11.943 12.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 H 0.088 0.912 4 C -0.023 4.023 5 C -0.634 4.634 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.550 5.550 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.166 4.166 14 H 0.120 0.880 15 C -0.158 4.158 16 C -0.242 4.242 17 S -0.070 6.070 18 H 0.055 0.945 19 H 0.064 0.936 20 H 0.086 0.914 21 H 0.026 0.974 22 H 0.024 0.976 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.952 2.536 -9.727 10.240 hybrid contribution -0.952 -0.378 -2.123 2.357 sum -2.903 2.158 -11.850 12.390 Atomic orbital electron populations 1.21683 0.95177 1.01024 1.00763 1.21177 0.95583 0.99286 0.92745 0.91217 1.19261 0.95539 0.95367 0.92088 1.22008 1.38834 1.10332 0.92263 0.93194 1.25830 0.94674 0.97139 1.01384 1.70772 1.36065 1.14675 1.33532 0.83566 0.76005 0.75182 0.75657 1.20823 1.21483 1.21465 1.24389 0.89926 1.03053 0.99260 0.88015 1.22896 0.96891 1.02365 0.93663 1.24126 0.97094 1.04576 0.98413 1.89134 1.19603 1.92018 1.06232 0.94485 0.93598 0.91437 0.97393 0.97566 0.92156 0.89840 0.88379 0.88529 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.80 37.16 0.33 -2.00 15 2 C -0.07 -1.41 2.06 -90.62 -0.19 -1.59 15 3 H 0.07 1.52 8.10 -51.93 -0.42 1.10 15 4 C 0.01 0.38 3.74 -27.88 -0.10 0.27 15 5 C -0.60 -17.14 8.41 -34.44 -0.29 -17.43 15 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 15 7 C 0.01 0.39 5.46 -17.82 -0.10 0.29 15 8 N -0.91 -28.79 13.65 55.43 0.76 -28.03 15 9 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 15 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 13 C -0.04 -0.65 3.00 -26.71 -0.08 -0.73 15 14 H 0.10 1.73 8.14 -51.93 -0.42 1.30 15 15 C -0.12 -1.54 6.19 -26.69 -0.17 -1.71 15 16 C -0.09 -1.18 7.98 37.18 0.30 -0.88 15 17 S -0.30 -5.36 24.21 -107.50 -2.60 -7.96 15 18 H 0.04 0.55 7.42 -51.93 -0.39 0.16 15 19 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.07 1.35 6.95 -51.93 -0.36 0.99 15 21 H 0.01 0.22 7.89 -51.93 -0.41 -0.19 15 22 H 0.01 0.17 8.00 -51.93 -0.42 -0.25 15 23 H 0.27 8.47 7.22 -40.82 -0.29 8.18 15 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.10 1.26 8.12 -51.93 -0.42 0.83 15 26 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 236.20 15.07 3.56 3.56 Total: -1.00 -31.52 236.20 -7.66 -39.18 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.99 Total: -3.67 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -0.30 Total: -23.77 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.76 Total: -28.03 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.60 Total: -7.96 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.52 -7.66 -39.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511517.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.861 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds