Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 H 1.08999 * 112.49278 * 290.22592 * 13 2 1 15 15 C 1.53040 * 113.14626 * 60.00333 * 13 2 1 16 16 C 1.53044 * 89.86484 * 148.15214 * 15 13 2 17 17 S 1.81422 * 113.14714 * 160.40640 * 13 2 1 18 18 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 19 19 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 21 21 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 22 22 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 23 23 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 24 24 H 1.08997 * 113.15266 * 263.40618 * 15 13 2 25 25 H 1.09000 * 113.15087 * 32.90684 * 15 13 2 26 26 H 1.09000 * 113.14539 * 82.35933 * 16 15 13 27 27 H 1.08991 * 113.15371 * 211.80447 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 1 1.8508 -1.7944 -1.2176 15 6 1.5772 -0.0670 -2.5529 16 6 2.8770 -0.5066 -3.2307 17 16 3.7594 -0.3113 -1.6576 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5140 0.8899 21 1 3.1263 -0.7995 1.2057 22 1 1.6053 -1.7197 1.2953 23 1 2.9286 -2.0221 3.0617 24 1 0.6913 -0.5385 -2.9782 25 1 1.4784 1.0159 -2.4773 26 1 2.8497 -1.5383 -3.5813 27 1 3.2145 0.1868 -4.0010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511517.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -27.480744 kcal Electronic energy + Delta-G solvation = -9642.566022 eV Core-core repulsion = 7911.452227 eV Total energy + Delta-G solvation = -1731.113795 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.73619 -35.86885 -33.66470 -28.60246 -27.15433 -25.07419 -22.96368 -21.17558 -18.99539 -17.89163 -16.29177 -15.67465 -15.41733 -14.84045 -14.71183 -14.28536 -13.56848 -13.33988 -13.22698 -12.75247 -12.58086 -12.46091 -11.97528 -11.82278 -11.66051 -11.27300 -10.79162 -10.55532 -10.53723 -8.86031 -8.69380 -6.38963 0.96587 1.05061 1.50071 1.59429 1.78118 2.55984 3.15547 3.45353 3.73449 4.11601 4.15855 4.25647 4.46068 4.57445 4.61307 4.75724 4.87224 4.99638 5.10787 5.21453 5.31009 5.40606 5.58954 6.00070 6.17730 6.56207 7.43404 8.70605 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.068501 B = 0.010188 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.654491 B = 2747.537130 C = 2964.560089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.061 4.061 3 H 0.055 0.945 4 C 0.019 3.981 5 C -0.607 4.607 6 H 0.055 0.945 7 C -0.045 4.045 8 N -0.941 5.941 9 Si 1.118 2.882 10 H -0.285 1.285 11 H -0.271 1.271 12 H -0.263 1.263 13 C -0.029 4.029 14 H 0.101 0.899 15 C -0.102 4.102 16 C -0.057 4.057 17 S -0.406 6.406 18 H 0.081 0.919 19 H 0.048 0.952 20 H 0.045 0.955 21 H -0.028 1.028 22 H -0.014 1.014 23 H 0.251 0.749 24 H 0.123 0.877 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 3.203 -13.582 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.018 4.018 5 C -0.645 4.645 6 H 0.074 0.926 7 C -0.241 4.241 8 N -0.579 5.579 9 Si 0.938 3.062 10 H -0.211 1.211 11 H -0.196 1.196 12 H -0.188 1.188 13 C -0.157 4.157 14 H 0.119 0.881 15 C -0.140 4.140 16 C -0.205 4.205 17 S -0.181 6.181 18 H 0.100 0.900 19 H 0.067 0.933 20 H 0.064 0.936 21 H -0.010 1.010 22 H 0.004 0.996 23 H 0.060 0.940 24 H 0.141 0.859 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.847 3.505 -11.403 12.535 hybrid contribution -0.347 -0.711 -1.675 1.852 sum -4.195 2.794 -13.078 14.015 Atomic orbital electron populations 1.21617 0.92854 1.01582 1.01892 1.21005 0.97385 0.97916 0.91806 0.92688 1.19168 0.93247 0.94804 0.94608 1.22454 1.38133 1.10524 0.93380 0.92628 1.27500 0.93935 0.97225 1.05442 1.70922 1.38229 1.16139 1.32650 0.82943 0.77233 0.74364 0.71618 1.21083 1.19636 1.18788 1.24424 0.88314 1.03050 0.99940 0.88052 1.22876 0.98362 1.02647 0.90155 1.24222 0.94427 1.06591 0.95238 1.89597 1.22924 1.92221 1.13345 0.90024 0.93283 0.93622 1.00985 0.99563 0.93975 0.85887 0.87848 0.86385 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.80 71.98 0.63 -3.50 15 2 C -0.06 -2.51 2.06 -10.79 -0.02 -2.53 15 3 H 0.05 2.40 8.10 -2.39 -0.02 2.38 15 4 C 0.02 1.02 3.74 29.85 0.11 1.13 15 5 C -0.61 -35.57 8.41 25.60 0.22 -35.36 15 6 H 0.06 3.13 7.06 -2.91 -0.02 3.11 15 7 C -0.04 -2.68 5.46 84.65 0.46 -2.22 15 8 N -0.94 -61.20 13.65 21.45 0.29 -60.91 15 9 Si 1.12 51.72 29.90 68.60 2.05 53.77 15 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 15 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 13 C -0.03 -0.95 3.00 30.61 0.09 -0.86 15 14 H 0.10 3.32 8.14 -2.39 -0.02 3.30 15 15 C -0.10 -2.18 6.19 30.62 0.19 -1.99 15 16 C -0.06 -1.23 7.98 72.00 0.57 -0.66 15 17 S -0.41 -14.75 24.21 -56.49 -1.37 -16.11 15 18 H 0.08 2.08 7.42 -2.39 -0.02 2.06 15 19 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 20 H 0.04 1.75 6.95 -2.39 -0.02 1.73 15 21 H -0.03 -1.71 7.89 -2.39 -0.02 -1.73 15 22 H -0.01 -0.80 8.00 -2.39 -0.02 -0.82 15 23 H 0.25 16.71 7.22 -92.71 -0.67 16.04 15 24 H 0.12 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.10 2.18 8.12 -2.39 -0.02 2.16 15 26 H 0.12 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.12 1.99 8.14 -2.39 -0.02 1.97 15 Total: -1.00 -71.88 236.20 4.46 -67.43 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.22 Total: 1.82 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 2.26 Total: -45.99 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.29 Total: -60.91 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Atomic # 16 Polarization: -14.75 SS G_CDS: -1.37 Total: -16.11 kcal Total: -71.88 4.46 -67.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511517.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.948 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds