Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47523 * 239.99254 * 2 1 3 5 5 C 1.50699 * 109.46700 * 65.00024 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.53002 * 109.47090 * 119.99425 * 2 1 3 14 14 H 1.09003 * 113.40789 * 70.86800 * 13 2 1 15 15 C 1.55886 * 114.37918 * 297.19165 * 13 2 1 16 16 C 1.55888 * 102.94809 * 222.40195 * 15 13 2 17 17 S 1.83082 * 114.38291 * 204.50720 * 13 2 1 18 18 H 1.09002 * 109.47257 * 300.00762 * 1 2 3 19 19 H 1.09008 * 109.47033 * 60.00904 * 1 2 3 20 20 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47139 * 305.00400 * 4 2 1 22 22 H 1.08997 * 109.47675 * 185.00000 * 4 2 1 23 23 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 24 24 H 1.08997 * 110.82483 * 340.93305 * 15 13 2 25 25 H 1.08995 * 110.82830 * 103.86302 * 15 13 2 26 26 H 1.08999 * 114.37799 * 270.80818 * 16 15 13 27 27 H 1.08997 * 114.41797 * 137.59977 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0807 0.9743 -2.3758 7 6 1.9925 -0.4026 -3.7282 8 7 1.6450 0.2768 -4.7994 9 14 2.9617 -1.9899 -3.9026 10 1 2.0216 -3.1337 -4.0192 11 1 3.8236 -2.1775 -2.7080 12 1 3.8102 -1.9207 -5.1193 13 6 2.0400 -0.7211 1.2493 14 1 1.8752 -1.7984 1.2251 15 6 1.6427 -0.0387 2.5934 16 6 2.9530 -0.1316 3.4329 17 16 3.7225 -0.2255 1.7743 18 1 -0.3634 0.5140 0.8899 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 1.6054 -1.7200 -1.2949 22 1 3.1264 -0.7996 -1.2055 23 1 1.8917 -0.0466 -5.6800 24 1 1.3595 1.0012 2.4311 25 1 0.8321 -0.5818 3.0790 26 1 3.0450 -1.0429 4.0239 27 1 3.1956 0.7727 3.9910 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511520.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -1.604482 kcal Electronic energy + Delta-G solvation = -9598.546812 eV Core-core repulsion = 7868.555096 eV Total energy + Delta-G solvation = -1729.991716 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.76146 -33.59590 -31.84390 -27.69037 -26.18047 -23.19693 -21.04146 -19.32530 -17.05591 -16.37241 -14.74879 -14.30459 -13.76083 -13.37007 -13.06752 -12.52684 -12.38696 -11.98538 -11.66686 -11.36953 -11.05772 -10.83560 -10.59964 -9.94947 -9.76345 -9.59327 -9.11621 -8.92931 -8.51184 -7.43847 -6.02016 -3.99312 1.93308 2.44394 3.32610 3.40576 3.46364 4.48145 4.63410 4.70132 4.98150 5.31685 5.40003 5.49765 5.65570 5.76385 5.94964 6.09480 6.11161 6.37063 6.73309 6.86564 7.00143 7.27426 7.42093 7.80811 8.55422 9.02439 9.60895 11.11220 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.056909 B = 0.011311 C = 0.010179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.891508 B = 2474.872788 C = 2750.076762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 H 0.076 0.924 4 C -0.008 4.008 5 C -0.514 4.514 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.288 1.288 13 C -0.019 4.019 14 H 0.106 0.894 15 C -0.142 4.142 16 C -0.081 4.081 17 S -0.325 6.325 18 H 0.036 0.964 19 H 0.072 0.928 20 H 0.046 0.954 21 H 0.012 0.988 22 H 0.016 0.984 23 H 0.262 0.738 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -2.312 14.264 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 H 0.094 0.906 4 C -0.045 4.045 5 C -0.552 4.552 6 H 0.093 0.907 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.214 1.214 13 C -0.148 4.148 14 H 0.124 0.876 15 C -0.180 4.180 16 C -0.229 4.229 17 S -0.099 6.099 18 H 0.055 0.945 19 H 0.091 0.909 20 H 0.065 0.935 21 H 0.030 0.970 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.793 -2.109 13.531 13.718 hybrid contribution -0.395 -1.100 0.218 1.189 sum 0.398 -3.209 13.749 14.124 Atomic orbital electron populations 1.21706 0.94756 1.01223 1.01193 1.21019 0.95666 0.99502 0.91618 0.90552 1.19613 0.96150 0.95698 0.93088 1.21086 1.35506 1.09612 0.89011 0.90737 1.24999 0.95516 0.96938 0.95928 1.69909 1.47124 1.39261 0.98013 0.86839 0.80754 0.84322 0.77813 1.20314 1.18987 1.21373 1.24730 0.89742 1.02435 0.97859 0.87584 1.23602 0.97657 1.03460 0.93295 1.24550 0.97482 1.05138 0.95770 1.88739 1.23148 1.90389 1.07602 0.94457 0.90862 0.93457 0.97005 0.96528 0.92783 0.88778 0.90982 0.88356 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.85 37.16 0.33 -1.94 15 2 C -0.06 -1.14 2.12 -90.62 -0.19 -1.33 15 3 H 0.08 1.59 8.09 -51.93 -0.42 1.17 15 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 15 5 C -0.51 -14.61 8.96 -34.44 -0.31 -14.92 15 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 15 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 8 N -0.90 -28.08 13.96 55.43 0.77 -27.31 15 9 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 15 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 11 H -0.27 -6.63 6.54 56.52 0.37 -6.26 15 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 13 C -0.02 -0.32 3.86 -25.19 -0.10 -0.41 15 14 H 0.11 1.67 8.14 -51.93 -0.42 1.25 15 15 C -0.14 -1.79 5.79 -23.65 -0.14 -1.93 15 16 C -0.08 -0.96 9.09 38.70 0.35 -0.60 15 17 S -0.33 -5.58 23.68 -107.50 -2.55 -8.13 15 18 H 0.04 0.54 7.53 -51.93 -0.39 0.15 15 19 H 0.07 1.45 6.95 -51.92 -0.36 1.09 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 15 22 H 0.02 0.42 7.20 -51.93 -0.37 0.05 15 23 H 0.26 7.65 8.31 -40.82 -0.34 7.32 15 24 H 0.09 1.19 7.94 -51.93 -0.41 0.78 15 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 26 H 0.10 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.10 1.06 8.14 -51.93 -0.42 0.63 15 LS Contribution 235.10 15.07 3.54 3.54 Total: -1.00 -30.83 235.10 -7.16 -38.00 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -4.01 Total: -4.11 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.25 Total: -19.55 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.77 Total: -27.31 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -2.55 Total: -8.13 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.83 -7.16 -38.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511520.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.391 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds