Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47523 * 239.99254 * 2 1 3 5 5 C 1.50699 * 109.46700 * 65.00024 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.53002 * 109.47090 * 119.99425 * 2 1 3 14 14 H 1.09003 * 113.40789 * 70.86800 * 13 2 1 15 15 C 1.55886 * 114.37918 * 297.19165 * 13 2 1 16 16 C 1.55888 * 102.94809 * 222.40195 * 15 13 2 17 17 S 1.83082 * 114.38291 * 204.50720 * 13 2 1 18 18 H 1.09002 * 109.47257 * 300.00762 * 1 2 3 19 19 H 1.09008 * 109.47033 * 60.00904 * 1 2 3 20 20 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47139 * 305.00400 * 4 2 1 22 22 H 1.08997 * 109.47675 * 185.00000 * 4 2 1 23 23 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 24 24 H 1.08997 * 110.82483 * 340.93305 * 15 13 2 25 25 H 1.08995 * 110.82830 * 103.86302 * 15 13 2 26 26 H 1.08999 * 114.37799 * 270.80818 * 16 15 13 27 27 H 1.08997 * 114.41797 * 137.59977 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0807 0.9743 -2.3758 7 6 1.9925 -0.4026 -3.7282 8 7 1.6450 0.2768 -4.7994 9 14 2.9617 -1.9899 -3.9026 10 1 2.0216 -3.1337 -4.0192 11 1 3.8236 -2.1775 -2.7080 12 1 3.8102 -1.9207 -5.1193 13 6 2.0400 -0.7211 1.2493 14 1 1.8752 -1.7984 1.2251 15 6 1.6427 -0.0387 2.5934 16 6 2.9530 -0.1316 3.4329 17 16 3.7225 -0.2255 1.7743 18 1 -0.3634 0.5140 0.8899 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 1.6054 -1.7200 -1.2949 22 1 3.1264 -0.7996 -1.2055 23 1 1.8917 -0.0466 -5.6800 24 1 1.3595 1.0012 2.4311 25 1 0.8321 -0.5818 3.0790 26 1 3.0450 -1.0429 4.0239 27 1 3.1956 0.7727 3.9910 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511520.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -20.535427 kcal Electronic energy + Delta-G solvation = -9599.367720 eV Core-core repulsion = 7868.555096 eV Total energy + Delta-G solvation = -1730.812624 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.18697 -35.26709 -33.71252 -29.58499 -27.44882 -24.92108 -22.36142 -20.90541 -19.06296 -17.78965 -16.36092 -15.97225 -15.34767 -14.95613 -14.33845 -14.19444 -13.85439 -13.47781 -13.27030 -12.78927 -12.63018 -12.39203 -12.17213 -11.78973 -11.62236 -11.27111 -11.18333 -10.77316 -10.13062 -8.75815 -8.29932 -6.31876 0.78120 1.30265 1.31729 1.33870 1.45218 2.33720 3.05236 3.56352 3.62703 3.95299 4.22492 4.28963 4.51856 4.61506 4.67155 4.79237 4.91444 5.02444 5.11373 5.25751 5.36197 5.47784 5.64427 5.67668 6.28950 6.74866 7.31799 8.86608 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.056909 B = 0.011311 C = 0.010179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.891508 B = 2474.872788 C = 2750.076762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 H 0.054 0.946 4 C -0.004 4.004 5 C -0.519 4.519 6 H 0.040 0.960 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.261 1.261 11 H -0.260 1.260 12 H -0.284 1.284 13 C -0.011 4.011 14 H 0.116 0.884 15 C -0.131 4.131 16 C -0.039 4.039 17 S -0.430 6.430 18 H 0.074 0.926 19 H 0.039 0.961 20 H 0.059 0.941 21 H 0.020 0.980 22 H 0.000 1.000 23 H 0.265 0.735 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -3.751 16.812 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 H 0.073 0.927 4 C -0.041 4.041 5 C -0.557 4.557 6 H 0.059 0.941 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.185 1.185 11 H -0.184 1.184 12 H -0.210 1.210 13 C -0.139 4.139 14 H 0.134 0.866 15 C -0.169 4.169 16 C -0.187 4.187 17 S -0.205 6.205 18 H 0.093 0.907 19 H 0.058 0.942 20 H 0.078 0.922 21 H 0.038 0.962 22 H 0.019 0.981 23 H 0.074 0.926 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.142 0.858 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.413 -3.547 16.101 16.492 hybrid contribution -0.295 -0.572 -0.530 0.834 sum 0.118 -4.120 15.571 16.107 Atomic orbital electron populations 1.21624 0.93081 1.02060 1.01416 1.20828 0.97010 0.98087 0.91428 0.92728 1.19533 0.95167 0.95891 0.93539 1.21414 1.34459 1.08807 0.90997 0.94135 1.25912 0.96792 1.00704 0.95628 1.70052 1.48937 1.41417 0.98680 0.85776 0.79501 0.80232 0.77876 1.18535 1.18406 1.20972 1.24626 0.88156 1.02780 0.98361 0.86625 1.23442 0.99000 1.03418 0.91062 1.24801 0.94043 1.07407 0.92435 1.89145 1.26342 1.90753 1.14224 0.90709 0.94178 0.92235 0.96181 0.98127 0.92574 0.88768 0.87539 0.85760 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.85 71.98 0.64 -3.49 15 2 C -0.05 -2.07 2.12 -10.79 -0.02 -2.09 15 3 H 0.05 2.31 8.09 -2.39 -0.02 2.29 15 4 C 0.00 -0.19 3.52 29.85 0.10 -0.08 15 5 C -0.52 -30.36 8.96 25.60 0.23 -30.13 15 6 H 0.04 2.57 7.30 -2.91 -0.02 2.55 15 7 C 0.01 0.38 5.47 84.65 0.46 0.84 15 8 N -0.95 -60.64 13.96 21.45 0.30 -60.34 15 9 Si 0.94 46.17 27.47 68.60 1.88 48.05 15 10 H -0.26 -12.01 7.11 99.48 0.71 -11.30 15 11 H -0.26 -12.40 6.54 99.48 0.65 -11.75 15 12 H -0.28 -13.65 7.11 99.48 0.71 -12.95 15 13 C -0.01 -0.34 3.86 31.59 0.12 -0.22 15 14 H 0.12 3.29 8.14 -2.39 -0.02 3.27 15 15 C -0.13 -2.74 5.79 32.59 0.19 -2.56 15 16 C -0.04 -0.76 9.09 72.98 0.66 -0.10 15 17 S -0.43 -14.24 23.68 -56.49 -1.34 -15.58 15 18 H 0.07 1.94 7.53 -2.39 -0.02 1.92 15 19 H 0.04 1.59 6.95 -2.38 -0.02 1.58 15 20 H 0.06 1.84 8.14 -2.38 -0.02 1.82 15 21 H 0.02 0.93 7.57 -2.39 -0.02 0.91 15 22 H 0.00 0.02 7.20 -2.39 -0.02 0.00 15 23 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 24 H 0.09 2.01 7.94 -2.39 -0.02 1.99 15 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -69.26 235.10 4.30 -64.97 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.07 Total: 0.72 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 2.38 Total: -37.82 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.30 Total: -60.34 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.05 kcal Atomic # 16 Polarization: -14.24 SS G_CDS: -1.34 Total: -15.58 kcal Total: -69.26 4.30 -64.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511520.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.431 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds