Wall clock time and date at job start Mon Mar 30 2020 02:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53264 * 109.57599 * 2 1 4 4 O 1.43088 * 108.94507 * 185.66753 * 3 2 1 5 5 C 1.42975 * 113.77157 * 57.96635 * 4 3 2 6 6 C 1.52997 * 109.46907 * 61.20690 * 5 4 3 7 7 C 1.50696 * 109.47078 * 181.20773 * 5 4 3 8 8 H 1.08003 * 120.00057 * 120.00027 * 7 5 4 9 9 C 1.37878 * 120.00341 * 299.99890 * 7 5 4 10 10 N 1.31521 * 119.99446 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00226 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46869 * 90.00350 * 11 9 7 13 13 H 1.48504 * 109.47173 * 209.99903 * 11 9 7 14 14 H 1.48498 * 109.47156 * 329.99939 * 11 9 7 15 15 O 1.42970 * 109.46731 * 301.20709 * 5 4 3 16 16 C 1.43087 * 113.77116 * 58.79410 * 15 5 4 17 17 H 1.09002 * 109.47153 * 179.36215 * 1 2 3 18 18 H 1.09001 * 109.46832 * 59.36406 * 1 2 3 19 19 H 1.09004 * 109.47261 * 299.36387 * 1 2 3 20 20 H 1.08999 * 109.57473 * 120.37957 * 2 1 3 21 21 H 1.08999 * 109.55788 * 305.50325 * 3 2 1 22 22 H 1.08997 * 109.55939 * 65.82372 * 3 2 1 23 23 H 1.09003 * 109.47318 * 300.00283 * 6 5 4 24 24 H 1.09000 * 109.46982 * 60.00257 * 6 5 4 25 25 H 1.08999 * 109.47248 * 180.02562 * 6 5 4 26 26 H 0.97004 * 119.99578 * 180.02562 * 10 9 7 27 27 H 1.08997 * 109.56071 * 182.18676 * 16 15 5 28 28 H 1.09005 * 109.64924 * 61.91708 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0435 1.4440 0.0000 4 8 3.4681 1.4305 -0.1337 5 6 3.9299 0.7681 -1.3135 6 6 3.3887 1.4905 -2.5489 7 6 5.4366 0.7847 -1.3417 8 1 5.9866 -0.1446 -1.3571 9 6 6.1129 1.9862 -1.3479 10 7 5.4430 3.1179 -1.3287 11 14 7.9804 2.0067 -1.3836 12 1 8.4484 2.0201 -2.7929 13 1 8.4755 3.2206 -0.6861 14 1 8.5018 0.7958 -0.7002 15 8 3.4681 -0.5849 -1.3121 16 6 2.0436 -0.7081 -1.2584 17 1 -0.3633 -1.0276 -0.0114 18 1 -0.3633 0.5237 -0.8842 19 1 -0.3634 0.5039 0.8957 20 1 1.8952 -0.5194 0.8860 21 1 1.6037 1.9877 -0.8361 22 1 1.7694 1.9288 0.9370 23 1 2.2989 1.4786 -2.5284 24 1 3.7408 2.5221 -2.5499 25 1 3.7404 0.9853 -3.4484 26 1 5.9188 3.9632 -1.3334 27 1 1.7696 -1.7624 -1.2214 28 1 1.6023 -0.2472 -2.1422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260540984.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:32 Heat of formation + Delta-G solvation = -121.628313 kcal Electronic energy + Delta-G solvation = -12327.587740 eV Core-core repulsion = 10149.638529 eV Total energy + Delta-G solvation = -2177.949211 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.80963 -36.13501 -35.78042 -34.23280 -30.63327 -27.97810 -26.70357 -26.57526 -23.10920 -20.46637 -19.01779 -18.12124 -16.85389 -16.20518 -16.05656 -15.73168 -15.11468 -14.68602 -13.96897 -13.74067 -13.19094 -13.03219 -12.87046 -12.72646 -12.60456 -12.33130 -12.09800 -11.88449 -11.60380 -11.22004 -10.75193 -10.43945 -9.94112 -8.20811 -6.42945 1.42268 1.44385 1.55913 2.36395 2.95513 3.31070 3.63610 3.82191 3.83509 4.22347 4.39109 4.56857 4.62197 4.66049 4.71925 4.78394 4.93871 5.01944 5.05497 5.20260 5.34517 5.51741 5.64512 6.09093 6.53236 6.64012 7.06727 7.35935 8.84597 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.075688 B = 0.013001 C = 0.012407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.853100 B = 2153.140070 C = 2256.228995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.156 4.156 3 C 0.044 3.956 4 O -0.401 6.401 5 C 0.378 3.622 6 C -0.171 4.171 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.034 3.966 10 N -0.886 5.886 11 Si 0.976 3.024 12 H -0.265 1.265 13 H -0.275 1.275 14 H -0.271 1.271 15 O -0.425 6.425 16 C 0.050 3.950 17 H 0.075 0.925 18 H 0.059 0.941 19 H 0.069 0.931 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.088 0.912 23 H 0.041 0.959 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.267 0.733 27 H 0.105 0.895 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 -3.069 0.408 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C -0.033 4.033 4 O -0.322 6.322 5 C 0.304 3.696 6 C -0.229 4.229 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.169 4.169 10 N -0.522 5.522 11 Si 0.799 3.201 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.195 1.195 15 O -0.347 6.347 16 C -0.026 4.026 17 H 0.094 0.906 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.088 0.912 21 H 0.059 0.941 22 H 0.106 0.894 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.282 -2.933 0.526 7.868 hybrid contribution 0.497 0.272 -0.124 0.580 sum -6.785 -2.661 0.402 7.299 Atomic orbital electron populations 1.21625 0.91246 1.03205 1.02734 1.22322 0.98829 0.97126 0.99247 1.22748 0.83658 0.95694 1.01154 1.88441 1.19641 1.77454 1.46662 1.20452 0.92133 0.74594 0.82428 1.22515 0.98013 1.03811 0.98581 1.20937 0.89245 0.93517 1.54667 0.92318 1.25794 1.04091 0.94438 0.92615 1.70079 1.37264 0.97772 1.47091 0.85306 0.78046 0.77888 0.78820 1.18998 1.19989 1.19544 1.88070 1.21680 1.30858 1.94087 1.22819 0.81685 1.01676 0.96411 0.90592 0.92153 0.91170 0.91205 0.94079 0.89392 0.94016 0.90397 0.93757 0.92350 0.87707 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.21 71.98 0.66 -2.49 15 2 C -0.16 -5.45 3.13 -10.62 -0.03 -5.48 15 3 C 0.04 1.86 5.89 72.07 0.42 2.28 15 4 O -0.40 -22.16 9.74 -126.22 -1.23 -23.39 15 5 C 0.38 20.89 1.07 29.85 0.03 20.92 15 6 C -0.17 -8.70 7.88 71.98 0.57 -8.13 15 7 C -0.55 -32.79 8.57 25.60 0.22 -32.57 15 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 15 9 C 0.03 1.93 5.24 84.65 0.44 2.37 15 10 N -0.89 -51.48 10.87 21.45 0.23 -51.24 15 11 Si 0.98 44.28 29.54 68.60 2.03 46.31 15 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 15 O -0.42 -21.76 10.34 -126.22 -1.30 -23.06 15 16 C 0.05 1.92 5.88 72.07 0.42 2.35 15 17 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 18 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 19 H 0.07 1.50 8.14 -2.38 -0.02 1.48 15 20 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 21 H 0.04 1.68 6.53 -2.39 -0.02 1.66 15 22 H 0.09 3.31 8.14 -2.39 -0.02 3.29 15 23 H 0.04 1.84 5.12 -2.39 -0.01 1.83 15 24 H 0.08 4.30 6.07 -2.39 -0.01 4.29 15 25 H 0.04 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.27 14.49 8.31 -92.70 -0.77 13.72 15 27 H 0.10 3.32 8.14 -2.39 -0.02 3.30 15 28 H 0.05 1.82 6.54 -2.38 -0.02 1.80 15 Total: -1.00 -66.72 226.05 3.60 -63.12 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.13 Total: 9.02 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 2.74 Total: -20.75 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.23 Total: -51.24 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -2.53 Total: -46.46 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.72 3.60 -63.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260540984.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.505 kcal (2) G-P(sol) polarization free energy of solvation -66.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds