Wall clock time and date at job start Mon Mar 30 2020 02:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48496 * 109.46968 * 269.99936 * 3 2 1 5 5 H 1.48503 * 109.47011 * 29.99453 * 3 2 1 6 6 H 1.48491 * 109.47149 * 149.99582 * 3 2 1 7 7 C 1.37871 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00466 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00187 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47337 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 185.00101 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 F 1.39905 * 109.47109 * 60.00092 * 13 12 11 15 15 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 13 12 17 17 H 0.97000 * 119.99777 * 0.02562 * 1 2 3 18 18 H 1.09008 * 109.46812 * 60.00327 * 9 7 2 19 19 H 1.09000 * 109.47041 * 300.00717 * 9 7 2 20 20 H 1.08992 * 109.47514 * 305.00536 * 10 9 7 21 21 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 22 22 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 23 23 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 24 24 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 25 25 H 1.09000 * 109.47486 * 180.02562 * 13 12 11 26 26 H 1.09002 * 109.46935 * 299.99411 * 15 13 12 27 27 H 1.09001 * 109.46812 * 179.97438 * 15 13 12 28 28 H 1.08993 * 109.47194 * 179.97438 * 16 15 13 29 29 H 1.09002 * 109.46695 * 59.99734 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0014 11 6 5.5463 -2.6383 0.1265 12 6 6.0564 -4.0808 0.1273 13 6 5.6512 -4.7658 -1.1794 14 9 6.2086 -4.0746 -2.2606 15 6 4.1263 -4.7640 -1.3047 16 6 3.6162 -3.3215 -1.3054 17 1 -0.4850 0.8401 -0.0004 18 1 3.8752 -0.6797 0.8896 19 1 3.8745 -0.6808 -0.8905 20 1 3.5871 -3.1748 0.8438 21 1 5.9807 -2.1002 -0.7160 22 1 5.8351 -2.1501 1.0573 23 1 7.1427 -4.0822 0.2169 24 1 5.6220 -4.6193 0.9696 25 1 6.0141 -5.7936 -1.1787 26 1 3.6919 -5.3025 -0.4623 27 1 3.8377 -5.2516 -2.2358 28 1 2.5300 -3.3203 -1.3951 29 1 4.0506 -2.7831 -2.1477 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260587247.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:18 Heat of formation + Delta-G solvation = -87.110630 kcal Electronic energy + Delta-G solvation = -11742.910167 eV Core-core repulsion = 9578.830544 eV Total energy + Delta-G solvation = -2164.079623 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.35954 -37.60258 -33.10276 -31.15173 -30.46548 -27.08399 -22.96842 -22.25226 -20.19217 -18.99500 -16.70346 -16.10994 -15.19690 -15.00921 -14.29560 -13.55845 -13.24957 -12.88182 -12.45500 -12.25497 -11.92677 -11.51885 -11.34258 -11.12721 -10.69114 -10.51882 -10.35909 -9.90399 -9.71106 -9.52334 -9.18202 -8.95132 -8.49247 -6.00313 -3.97094 3.34010 3.41119 3.45490 4.49294 4.84056 4.87390 4.97821 5.05696 5.33774 5.55389 5.67495 5.81253 5.83532 5.91706 6.00154 6.19676 6.32667 6.46621 6.59606 6.64825 6.91949 6.98781 7.11161 7.34641 7.51503 7.85119 8.58912 9.04789 9.63156 11.13110 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.062852 B = 0.010642 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.383643 B = 2630.497184 C = 2800.946584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.073 4.073 11 C -0.119 4.119 12 C -0.143 4.143 13 C 0.093 3.907 14 F -0.216 7.216 15 C -0.146 4.146 16 C -0.107 4.107 17 H 0.262 0.738 18 H 0.015 0.985 19 H 0.011 0.989 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.744 -7.852 -0.705 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.091 4.091 11 C -0.157 4.157 12 C -0.181 4.181 13 C 0.056 3.944 14 F -0.197 7.197 15 C -0.184 4.184 16 C -0.144 4.144 17 H 0.071 0.929 18 H 0.033 0.967 19 H 0.029 0.971 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.602 -7.716 -0.728 13.132 hybrid contribution 0.363 0.952 -0.061 1.020 sum 10.965 -6.764 -0.789 12.907 Atomic orbital electron populations 1.69919 1.06267 1.26755 1.51601 1.25033 0.94705 0.99120 0.94751 0.86799 0.80363 0.83776 0.78481 1.20364 1.21510 1.19071 1.21166 0.89518 0.94315 1.50188 0.90897 1.19623 0.97098 0.91869 0.96158 1.21032 0.92279 0.98810 0.96982 1.21656 0.97662 0.94598 1.01758 1.22116 1.00848 0.98371 0.96742 1.21564 0.94389 0.94410 0.83997 1.92772 1.86961 1.82126 1.57818 1.22191 0.93586 1.00166 1.02478 1.21492 1.02150 0.92506 0.98294 0.92857 0.96709 0.97058 0.91975 0.91981 0.92141 0.91783 0.90526 0.91010 0.90620 0.91659 0.90273 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.14 13.96 55.43 0.77 -27.37 15 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 15 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 15 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 15 7 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 15 8 H 0.07 2.20 7.30 -52.48 -0.38 1.82 15 9 C -0.01 -0.25 3.52 -27.88 -0.10 -0.34 15 10 C -0.07 -1.44 2.14 -90.62 -0.19 -1.63 15 11 C -0.12 -1.99 5.08 -26.73 -0.14 -2.13 15 12 C -0.14 -1.94 5.72 -26.73 -0.15 -2.09 15 13 C 0.09 1.28 4.12 -26.73 -0.11 1.17 15 14 F -0.22 -3.52 16.04 2.25 0.04 -3.48 15 15 C -0.15 -2.17 5.72 -26.73 -0.15 -2.32 15 16 C -0.11 -2.01 4.89 -26.73 -0.13 -2.15 15 17 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 18 H 0.01 0.36 7.20 -51.92 -0.37 -0.02 15 19 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 15 20 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 21 H 0.06 1.08 7.80 -51.93 -0.41 0.68 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 28 H 0.08 1.65 6.95 -51.93 -0.36 1.29 15 29 H 0.06 1.15 7.80 -51.93 -0.41 0.75 15 LS Contribution 233.76 15.07 3.52 3.52 Total: -1.00 -30.34 233.76 -6.16 -36.51 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -4.45 Total: -4.03 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -1.38 Total: -22.60 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.34 -6.16 -36.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587247.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.602 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds