Wall clock time and date at job start Mon Mar 30 2020 02:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48496 * 109.46968 * 269.99936 * 3 2 1 5 5 H 1.48503 * 109.47011 * 29.99453 * 3 2 1 6 6 H 1.48491 * 109.47149 * 149.99582 * 3 2 1 7 7 C 1.37871 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00466 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00187 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47337 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 185.00101 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 F 1.39905 * 109.47109 * 60.00092 * 13 12 11 15 15 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 13 12 17 17 H 0.97000 * 119.99777 * 0.02562 * 1 2 3 18 18 H 1.09008 * 109.46812 * 60.00327 * 9 7 2 19 19 H 1.09000 * 109.47041 * 300.00717 * 9 7 2 20 20 H 1.08992 * 109.47514 * 305.00536 * 10 9 7 21 21 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 22 22 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 23 23 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 24 24 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 25 25 H 1.09000 * 109.47486 * 180.02562 * 13 12 11 26 26 H 1.09002 * 109.46935 * 299.99411 * 15 13 12 27 27 H 1.09001 * 109.46812 * 179.97438 * 15 13 12 28 28 H 1.08993 * 109.47194 * 179.97438 * 16 15 13 29 29 H 1.09002 * 109.46695 * 59.99734 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0014 11 6 5.5463 -2.6383 0.1265 12 6 6.0564 -4.0808 0.1273 13 6 5.6512 -4.7658 -1.1794 14 9 6.2086 -4.0746 -2.2606 15 6 4.1263 -4.7640 -1.3047 16 6 3.6162 -3.3215 -1.3054 17 1 -0.4850 0.8401 -0.0004 18 1 3.8752 -0.6797 0.8896 19 1 3.8745 -0.6808 -0.8905 20 1 3.5871 -3.1748 0.8438 21 1 5.9807 -2.1002 -0.7160 22 1 5.8351 -2.1501 1.0573 23 1 7.1427 -4.0822 0.2169 24 1 5.6220 -4.6193 0.9696 25 1 6.0141 -5.7936 -1.1787 26 1 3.6919 -5.3025 -0.4623 27 1 3.8377 -5.2516 -2.2358 28 1 2.5300 -3.3203 -1.3951 29 1 4.0506 -2.7831 -2.1477 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587247.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:18 Heat of formation + Delta-G solvation = -105.030292 kcal Electronic energy + Delta-G solvation = -11743.687222 eV Core-core repulsion = 9578.830544 eV Total energy + Delta-G solvation = -2164.856678 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.51324 -39.03265 -35.10902 -32.92706 -31.73063 -28.88181 -24.74245 -23.57177 -21.73267 -20.43004 -18.86886 -17.28908 -16.51370 -16.28620 -16.17025 -15.16212 -14.81523 -14.35574 -14.29668 -13.74349 -13.35442 -13.01454 -12.94209 -12.72282 -12.26280 -11.97990 -11.83815 -11.67755 -11.53099 -11.20958 -10.77865 -10.71354 -10.63935 -8.27714 -6.29594 1.34365 1.35194 1.47465 2.36240 3.07454 3.70562 3.74603 3.82779 4.00825 4.27780 4.32150 4.52578 4.58194 4.61929 4.70034 4.99546 5.05444 5.11300 5.15600 5.21332 5.28902 5.41007 5.48002 5.57225 5.73634 5.75979 6.32769 6.77537 7.34210 8.88893 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.062852 B = 0.010642 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.383643 B = 2630.497184 C = 2800.946584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.519 4.519 8 H 0.037 0.963 9 C -0.009 4.009 10 C -0.071 4.071 11 C -0.116 4.116 12 C -0.138 4.138 13 C 0.089 3.911 14 F -0.232 7.232 15 C -0.142 4.142 16 C -0.106 4.106 17 H 0.265 0.735 18 H 0.017 0.983 19 H 0.008 0.992 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.097 -8.371 -0.316 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.557 4.557 8 H 0.056 0.944 9 C -0.047 4.047 10 C -0.090 4.090 11 C -0.153 4.153 12 C -0.176 4.176 13 C 0.053 3.947 14 F -0.213 7.213 15 C -0.179 4.179 16 C -0.143 4.143 17 H 0.073 0.927 18 H 0.035 0.965 19 H 0.027 0.973 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.973 -8.249 -0.338 15.377 hybrid contribution -0.450 1.056 -0.191 1.163 sum 12.522 -7.194 -0.529 14.451 Atomic orbital electron populations 1.70067 1.08143 1.27922 1.53279 1.25983 0.95581 1.03327 0.94563 0.85721 0.79556 0.78786 0.78980 1.19613 1.20888 1.17221 1.21487 0.91933 0.93025 1.49241 0.94439 1.19607 0.94092 0.95122 0.95844 1.20969 0.94906 0.95868 0.97221 1.21580 0.94630 0.97356 1.01770 1.22122 1.02318 0.95891 0.97260 1.21801 0.93063 0.96359 0.83474 1.92748 1.87081 1.82724 1.58751 1.22157 0.94977 0.96989 1.03814 1.21390 0.99984 0.95611 0.97363 0.92667 0.96482 0.97343 0.92353 0.92957 0.91309 0.89463 0.88705 0.87007 0.89086 0.90625 0.93724 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.80 13.96 21.45 0.30 -60.51 15 2 C 0.00 0.10 5.47 84.65 0.46 0.56 15 3 Si 0.95 45.64 27.47 68.60 1.88 47.52 15 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 6 H -0.25 -11.20 6.54 99.48 0.65 -10.55 15 7 C -0.52 -30.30 8.96 25.60 0.23 -30.07 15 8 H 0.04 2.38 7.30 -2.91 -0.02 2.36 15 9 C -0.01 -0.45 3.52 29.85 0.10 -0.34 15 10 C -0.07 -2.77 2.14 -10.79 -0.02 -2.80 15 11 C -0.12 -3.59 5.08 30.59 0.16 -3.44 15 12 C -0.14 -3.20 5.72 30.59 0.17 -3.02 15 13 C 0.09 2.12 4.12 30.60 0.13 2.25 15 14 F -0.23 -6.96 16.04 44.97 0.72 -6.24 15 15 C -0.14 -3.90 5.72 30.60 0.17 -3.72 15 16 C -0.11 -4.00 4.89 30.59 0.15 -3.85 15 17 H 0.26 15.78 8.31 -92.71 -0.77 15.01 15 18 H 0.02 0.80 7.20 -2.38 -0.02 0.79 15 19 H 0.01 0.40 7.57 -2.39 -0.02 0.38 15 20 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.05 1.72 7.80 -2.39 -0.02 1.70 15 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.11 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.09 2.23 8.14 -2.39 -0.02 2.22 15 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 28 H 0.04 1.95 6.95 -2.39 -0.02 1.93 15 29 H 0.04 1.78 7.80 -2.39 -0.02 1.76 15 Total: -1.00 -66.59 233.76 5.51 -61.08 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.05 Total: 2.57 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 1.56 Total: -44.43 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.30 Total: -60.51 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.72 Total: -6.24 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -66.59 5.51 -61.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587247.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.949 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds