Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34388 * 124.88333 * 2 1 4 4 C 1.37060 * 115.34722 * 180.23634 * 3 2 1 5 5 F 1.35100 * 122.95277 * 179.72938 * 4 3 2 6 6 C 1.38538 * 114.08856 * 359.49924 * 4 3 2 7 7 C 1.39827 * 125.41938 * 180.17061 * 6 4 3 8 8 H 1.08001 * 119.99924 * 0.31679 * 7 6 4 9 9 C 1.40023 * 119.99960 * 180.31712 * 7 6 4 10 10 N 1.30927 * 120.00086 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99730 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47203 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.46873 * 119.99861 * 11 9 7 14 14 H 1.48498 * 109.47140 * 239.99819 * 11 9 7 15 15 S 1.75780 * 124.88323 * 179.97438 * 2 1 3 16 16 H 1.09003 * 109.47040 * 90.01007 * 1 2 3 17 17 H 1.09003 * 109.46780 * 210.00518 * 1 2 3 18 18 H 1.09003 * 109.47206 * 330.00638 * 1 2 3 19 19 H 1.08002 * 122.32305 * 359.95510 * 3 2 1 20 20 H 0.97001 * 120.00045 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2756 1.1024 0.0000 4 6 3.6272 0.8753 -0.0051 5 9 4.5398 1.8716 -0.0112 6 6 3.9754 -0.4656 0.0016 7 6 5.2820 -0.9636 0.0018 8 1 6.1197 -0.2819 0.0016 9 6 5.5042 -2.3461 0.0023 10 7 4.4887 -3.1724 0.0020 11 14 7.2498 -3.0114 0.0033 12 1 8.2110 -1.8794 0.0028 13 1 7.4625 -3.8414 1.2162 14 1 7.4636 -3.8421 -1.2089 15 16 2.5123 -1.4420 0.0006 16 1 -0.3633 -0.0002 -1.0277 17 1 -0.3633 -0.8900 0.5139 18 1 -0.3634 0.8901 0.5137 19 1 1.8572 2.0981 -0.0007 20 1 4.6427 -4.1301 0.0027 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260611867.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = -65.579716 kcal Electronic energy + Delta-G solvation = -9107.934218 eV Core-core repulsion = 7115.874928 eV Total energy + Delta-G solvation = -1992.059290 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.021 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.90825 -37.59538 -36.00399 -32.20658 -29.50692 -25.49846 -23.09810 -20.46716 -19.39570 -17.37830 -17.29970 -15.97548 -15.94013 -14.90195 -14.50251 -14.15166 -14.09182 -13.54946 -13.26256 -13.20503 -12.43223 -12.25173 -11.94823 -11.63948 -11.25156 -11.05383 -9.41732 -8.90648 -8.68423 -6.52200 0.61398 1.34881 1.44340 1.46029 1.53969 1.92427 2.01564 2.15626 2.91721 4.31886 4.56982 4.76833 4.91309 4.92740 4.95091 5.26371 5.52429 5.61703 5.96838 6.01216 6.47799 6.54701 7.96930 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.054617 B = 0.015869 C = 0.012379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.536080 B = 1764.050834 C = 2261.439658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.360 4.360 3 C -0.110 4.110 4 C -0.208 4.208 5 F -0.175 7.175 6 C -0.033 4.033 7 C -0.411 4.411 8 H 0.088 0.912 9 C 0.017 3.983 10 N -0.797 5.797 11 Si 1.013 2.987 12 H -0.261 1.261 13 H -0.253 1.253 14 H -0.254 1.254 15 S 0.166 5.834 16 H 0.061 0.939 17 H 0.061 0.939 18 H 0.067 0.933 19 H 0.120 0.880 20 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -2.753 0.024 2.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.477 4.477 3 C -0.139 4.139 4 C -0.233 4.233 5 F -0.155 7.155 6 C -0.153 4.153 7 C -0.445 4.445 8 H 0.106 0.894 9 C -0.201 4.201 10 N -0.424 5.424 11 Si 0.831 3.169 12 H -0.185 1.185 13 H -0.177 1.177 14 H -0.178 1.178 15 S 0.425 5.575 16 H 0.080 0.920 17 H 0.080 0.920 18 H 0.086 0.914 19 H 0.138 0.862 20 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.398 -4.416 0.024 4.632 hybrid contribution 1.151 1.803 -0.006 2.139 sum -0.247 -2.612 0.018 2.624 Atomic orbital electron populations 1.19925 0.87091 1.01921 1.01424 1.24753 1.00891 0.98420 1.23625 1.19240 0.91257 0.99057 1.04372 1.16779 0.86703 0.84024 1.35799 1.91129 1.67157 1.60237 1.96984 1.22247 0.99278 0.94234 0.99582 1.19421 0.91907 0.93675 1.39543 0.89413 1.27173 1.05671 0.95831 0.91452 1.68834 1.34663 1.06752 1.32171 0.84660 0.73727 0.78617 0.79903 1.18481 1.17735 1.17756 1.84160 0.92597 1.04670 1.76100 0.91986 0.91986 0.91427 0.86205 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.59 10.36 71.24 0.74 -0.85 14 2 C -0.36 -16.84 6.51 24.81 0.16 -16.68 14 3 C -0.11 -5.57 10.00 21.11 0.21 -5.36 14 4 C -0.21 -11.83 7.47 22.06 0.16 -11.66 14 5 F -0.18 -9.99 17.20 44.97 0.77 -9.22 14 6 C -0.03 -1.85 6.19 22.73 0.14 -1.71 14 7 C -0.41 -22.37 9.19 23.09 0.21 -22.16 14 8 H 0.09 4.77 7.85 -2.91 -0.02 4.74 14 9 C 0.02 0.82 5.50 85.26 0.47 1.29 14 10 N -0.80 -37.88 10.65 21.85 0.23 -37.65 14 11 Si 1.01 35.46 29.56 68.60 2.03 37.49 14 12 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 13 H -0.25 -8.26 7.11 99.48 0.71 -7.55 14 14 H -0.25 -8.27 7.11 99.48 0.71 -7.56 14 15 S 0.17 8.36 20.24 -56.49 -1.14 7.22 14 16 H 0.06 1.99 8.14 -2.39 -0.02 1.97 14 17 H 0.06 2.00 8.14 -2.39 -0.02 1.98 14 18 H 0.07 2.12 8.14 -2.39 -0.02 2.10 14 19 H 0.12 5.44 8.06 -2.91 -0.02 5.42 14 20 H 0.31 12.90 8.30 -92.71 -0.77 12.13 14 Total: -1.00 -59.85 202.84 5.24 -54.61 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.25 Total: 4.68 kcal Atomic # 6 Polarization: -59.23 SS G_CDS: 2.10 Total: -57.13 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.23 Total: -37.65 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 0.77 Total: -9.22 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Atomic # 16 Polarization: 8.36 SS G_CDS: -1.14 Total: 7.22 kcal Total: -59.85 5.24 -54.61 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260611867.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.969 kcal (2) G-P(sol) polarization free energy of solvation -59.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds