Wall clock time and date at job start Mon Mar 30 2020 02:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47242 * 2 1 4 4 C 1.50709 * 109.46976 * 240.00648 * 2 1 3 5 5 H 1.08000 * 119.99936 * 239.99575 * 4 2 1 6 6 C 1.37878 * 120.00125 * 60.00223 * 4 2 1 7 7 N 1.31517 * 119.99733 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00084 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46965 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47597 * 119.99563 * 8 6 4 11 11 H 1.48506 * 109.46884 * 239.99786 * 8 6 4 12 12 C 1.52996 * 109.47378 * 120.00584 * 2 1 3 13 13 H 1.09007 * 109.60525 * 61.11776 * 12 2 1 14 14 C 1.53855 * 109.46694 * 300.86952 * 12 2 1 15 15 C 1.55133 * 106.90048 * 192.91233 * 14 12 2 16 16 S 1.83460 * 102.20541 * 42.11174 * 15 14 12 17 17 C 1.54275 * 109.61260 * 181.44981 * 12 2 1 18 18 H 1.09004 * 109.47494 * 59.99807 * 1 2 3 19 19 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47355 * 299.99246 * 1 2 3 21 21 H 0.96999 * 119.99568 * 180.02562 * 7 6 4 22 22 H 1.08997 * 109.97764 * 73.54152 * 14 12 2 23 23 H 1.09001 * 109.97058 * 312.27116 * 14 12 2 24 24 H 1.09001 * 110.85718 * 283.93355 * 15 14 12 25 25 H 1.09001 * 110.85605 * 160.29277 * 15 14 12 26 26 H 1.08997 * 110.39631 * 28.90881 * 17 12 2 27 27 H 1.08998 * 110.50505 * 266.54230 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3213 -1.1199 -4.0082 9 1 3.1463 -2.2867 -3.6041 10 1 1.1660 -1.5862 -4.8163 11 1 3.1465 -0.1868 -4.8166 12 6 2.0400 -0.7213 1.2491 13 1 1.6943 -1.7551 1.2413 14 6 1.5092 -0.0090 2.5053 15 6 2.3101 -0.5656 3.7117 16 16 4.0192 -0.6267 3.0477 17 6 3.5823 -0.6914 1.2709 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 0.7081 1.1612 -3.4843 22 1 0.4478 -0.2210 2.6331 23 1 1.6666 1.0661 2.4180 24 1 1.9626 -1.5629 3.9812 25 1 2.2487 0.1114 4.5638 26 1 3.9524 0.1952 0.7561 27 1 3.9882 -1.5932 0.8124 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:28 Heat of formation + Delta-G solvation = -26.069558 kcal Electronic energy + Delta-G solvation = -9839.980634 eV Core-core repulsion = 8108.928032 eV Total energy + Delta-G solvation = -1731.052602 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.91056 -33.07128 -30.31107 -28.42199 -25.18636 -23.63850 -21.35944 -18.95719 -16.51875 -15.83549 -14.85226 -14.47454 -13.68394 -13.31379 -12.56929 -12.12307 -11.90427 -11.50510 -11.28884 -11.02736 -10.84407 -10.51904 -10.39902 -10.25209 -9.97775 -9.55319 -8.99151 -8.80011 -8.37464 -7.28029 -6.02441 -4.09283 2.35938 2.91877 3.27344 3.35880 3.39317 4.40474 5.18580 5.24729 5.29751 5.55426 5.68040 5.82459 6.00615 6.23866 6.26519 6.62953 6.68525 6.73119 6.91875 7.10769 7.28195 7.68278 7.91210 8.09228 8.39013 8.94082 9.56285 11.03340 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.059968 B = 0.011828 C = 0.010365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.800114 B = 2366.642982 C = 2700.639769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 H 0.029 0.971 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.889 3.111 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.085 4.085 13 H 0.067 0.933 14 C -0.123 4.123 15 C -0.064 4.064 16 S -0.351 6.351 17 C -0.033 4.033 18 H 0.082 0.918 19 H 0.024 0.976 20 H 0.009 0.991 21 H 0.259 0.741 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 -1.863 7.466 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.035 3.965 3 H 0.047 0.953 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.105 4.105 13 H 0.086 0.914 14 C -0.161 4.161 15 C -0.212 4.212 16 S -0.125 6.125 17 C -0.181 4.181 18 H 0.101 0.899 19 H 0.044 0.956 20 H 0.028 0.972 21 H 0.069 0.931 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.767 -1.756 7.892 8.276 hybrid contribution -0.769 -0.491 -1.488 1.745 sum 0.999 -2.247 6.403 6.859 Atomic orbital electron populations 1.21856 0.98599 0.98952 1.00226 1.18715 0.92576 0.95496 0.89690 0.95312 1.21223 1.31059 1.12339 0.90512 0.92573 1.24961 0.95054 0.94953 0.99003 1.69896 1.36758 1.22965 1.23233 0.86582 0.78667 0.79768 0.83285 1.19782 1.21068 1.21038 1.22084 0.91462 1.00531 0.96431 0.91440 1.22706 0.99897 1.01187 0.92330 1.24191 0.92602 1.03789 1.00660 1.87228 1.15800 1.98201 1.11283 1.24048 0.99152 1.05722 0.89145 0.89913 0.95648 0.97157 0.93070 0.90301 0.90795 0.89921 0.89021 0.88756 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.63 37.16 0.32 -2.88 15 2 C 0.05 1.30 1.74 -91.77 -0.16 1.14 15 3 H 0.03 0.75 8.12 -51.93 -0.42 0.33 15 4 C -0.51 -13.49 8.01 -34.44 -0.28 -13.77 15 5 H 0.06 1.46 7.42 -52.49 -0.39 1.07 15 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -24.98 11.32 55.43 0.63 -24.36 15 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 15 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 12 C -0.09 -1.68 2.14 -89.51 -0.19 -1.87 15 13 H 0.07 1.35 8.14 -51.92 -0.42 0.93 15 14 C -0.12 -2.05 4.94 -25.16 -0.12 -2.17 15 15 C -0.06 -0.96 7.38 38.29 0.28 -0.68 15 16 S -0.35 -6.16 23.26 -107.50 -2.50 -8.66 15 17 C -0.03 -0.64 6.01 37.82 0.23 -0.41 15 18 H 0.08 2.15 6.07 -51.93 -0.32 1.83 15 19 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.01 0.20 6.74 -51.93 -0.35 -0.15 15 21 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.08 1.23 7.24 -51.93 -0.38 0.86 15 23 H 0.07 1.27 8.11 -51.93 -0.42 0.85 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.09 1.92 7.87 -51.93 -0.41 1.51 15 27 H 0.09 1.68 8.05 -51.93 -0.42 1.26 15 LS Contribution 230.08 15.07 3.47 3.47 Total: -1.00 -27.15 230.08 -7.37 -34.51 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -3.93 Total: -1.82 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.02 Total: -19.07 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.63 Total: -24.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -6.16 SS G_CDS: -2.50 Total: -8.66 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.15 -7.37 -34.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.443 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds