Wall clock time and date at job start Mon Mar 30 2020 02:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47242 * 2 1 4 4 C 1.50709 * 109.46976 * 240.00648 * 2 1 3 5 5 H 1.08000 * 119.99936 * 239.99575 * 4 2 1 6 6 C 1.37878 * 120.00125 * 60.00223 * 4 2 1 7 7 N 1.31517 * 119.99733 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00084 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46965 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47597 * 119.99563 * 8 6 4 11 11 H 1.48506 * 109.46884 * 239.99786 * 8 6 4 12 12 C 1.52996 * 109.47378 * 120.00584 * 2 1 3 13 13 H 1.09007 * 109.60525 * 61.11776 * 12 2 1 14 14 C 1.53855 * 109.46694 * 300.86952 * 12 2 1 15 15 C 1.55133 * 106.90048 * 192.91233 * 14 12 2 16 16 S 1.83460 * 102.20541 * 42.11174 * 15 14 12 17 17 C 1.54275 * 109.61260 * 181.44981 * 12 2 1 18 18 H 1.09004 * 109.47494 * 59.99807 * 1 2 3 19 19 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47355 * 299.99246 * 1 2 3 21 21 H 0.96999 * 119.99568 * 180.02562 * 7 6 4 22 22 H 1.08997 * 109.97764 * 73.54152 * 14 12 2 23 23 H 1.09001 * 109.97058 * 312.27116 * 14 12 2 24 24 H 1.09001 * 110.85718 * 283.93355 * 15 14 12 25 25 H 1.09001 * 110.85605 * 160.29277 * 15 14 12 26 26 H 1.08997 * 110.39631 * 28.90881 * 17 12 2 27 27 H 1.08998 * 110.50505 * 266.54230 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3213 -1.1199 -4.0082 9 1 3.1463 -2.2867 -3.6041 10 1 1.1660 -1.5862 -4.8163 11 1 3.1465 -0.1868 -4.8166 12 6 2.0400 -0.7213 1.2491 13 1 1.6943 -1.7551 1.2413 14 6 1.5092 -0.0090 2.5053 15 6 2.3101 -0.5656 3.7117 16 16 4.0192 -0.6267 3.0477 17 6 3.5823 -0.6914 1.2709 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 0.7081 1.1612 -3.4843 22 1 0.4478 -0.2210 2.6331 23 1 1.6666 1.0661 2.4180 24 1 1.9626 -1.5629 3.9812 25 1 2.2487 0.1114 4.5638 26 1 3.9524 0.1952 0.7561 27 1 3.9882 -1.5932 0.8124 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:28 Heat of formation + Delta-G solvation = -40.286539 kcal Electronic energy + Delta-G solvation = -9840.597128 eV Core-core repulsion = 8108.928032 eV Total energy + Delta-G solvation = -1731.669096 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.54864 -34.93643 -32.03768 -30.01531 -27.16225 -25.14894 -23.03473 -20.62450 -18.43196 -17.34428 -16.68169 -16.01964 -15.22135 -14.98779 -14.24533 -13.85758 -13.45733 -13.12582 -12.86279 -12.74346 -12.67186 -12.30385 -12.21417 -11.90309 -11.60295 -11.23958 -10.73853 -10.60574 -10.42051 -8.67007 -8.08066 -6.20813 1.00470 1.39561 1.42888 1.52007 1.52667 2.43609 3.20665 3.84579 3.90254 4.12658 4.29955 4.43448 4.67197 4.77533 4.86537 4.95342 5.01541 5.13839 5.21586 5.36745 5.39664 5.63677 5.96598 6.14982 6.38563 6.90592 7.47687 8.96633 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.059968 B = 0.011828 C = 0.010365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.800114 B = 2366.642982 C = 2700.639769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.054 3.946 3 H -0.002 1.002 4 C -0.524 4.524 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.947 3.053 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.284 1.284 12 C -0.080 4.080 13 H 0.067 0.933 14 C -0.118 4.118 15 C -0.050 4.050 16 S -0.360 6.360 17 C -0.033 4.033 18 H 0.051 0.949 19 H 0.027 0.973 20 H 0.037 0.963 21 H 0.259 0.741 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 -2.642 8.675 9.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.034 3.966 3 H 0.016 0.984 4 C -0.562 4.562 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.774 3.226 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.210 1.210 12 C -0.100 4.100 13 H 0.085 0.915 14 C -0.157 4.157 15 C -0.198 4.198 16 S -0.134 6.134 17 C -0.181 4.181 18 H 0.070 0.930 19 H 0.046 0.954 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.114 0.886 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.137 0.863 26 H 0.093 0.907 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.642 -2.542 9.111 9.601 hybrid contribution -0.729 -0.231 -1.818 1.972 sum 0.913 -2.774 7.293 7.856 Atomic orbital electron populations 1.21707 0.98059 0.98962 1.00047 1.18636 0.93003 0.93957 0.90975 0.98393 1.21577 1.30657 1.12233 0.91759 0.92788 1.25688 0.95440 0.95700 1.01799 1.70023 1.37882 1.24217 1.23699 0.85662 0.78143 0.78795 0.80012 1.19176 1.20776 1.20977 1.21957 0.91718 1.00198 0.96115 0.91470 1.22619 1.01052 1.00444 0.91542 1.24306 0.89590 1.05566 1.00318 1.87268 1.18432 1.98237 1.09491 1.23856 0.98946 1.04554 0.90768 0.93025 0.95371 0.94382 0.93167 0.88577 0.91483 0.87947 0.86302 0.90749 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.63 71.98 0.62 -5.32 15 2 C 0.05 2.57 1.74 -11.54 -0.02 2.55 15 3 H 0.00 -0.11 8.12 -2.38 -0.02 -0.13 15 4 C -0.52 -27.73 8.01 25.60 0.21 -27.52 15 5 H 0.05 2.81 7.42 -2.91 -0.02 2.79 15 6 C 0.01 0.66 5.30 84.65 0.45 1.10 15 7 N -0.92 -52.37 11.32 21.45 0.24 -52.12 15 8 Si 0.95 43.15 29.54 68.60 2.03 45.17 15 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 12 C -0.08 -3.06 2.14 -10.07 -0.02 -3.08 15 13 H 0.07 2.58 8.14 -2.38 -0.02 2.56 15 14 C -0.12 -3.63 4.94 31.61 0.16 -3.47 15 15 C -0.05 -1.31 7.38 72.71 0.54 -0.77 15 16 S -0.36 -11.93 23.26 -56.49 -1.31 -13.24 15 17 C -0.03 -1.27 6.01 72.41 0.43 -0.83 15 18 H 0.05 2.69 6.07 -2.38 -0.01 2.68 15 19 H 0.03 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.04 1.48 6.74 -2.39 -0.02 1.46 15 21 H 0.26 14.12 8.31 -92.71 -0.77 13.34 15 22 H 0.10 2.65 7.24 -2.39 -0.02 2.63 15 23 H 0.07 2.17 8.11 -2.39 -0.02 2.15 15 24 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.12 2.53 8.14 -2.39 -0.02 2.52 15 26 H 0.07 3.08 7.87 -2.39 -0.02 3.06 15 27 H 0.08 3.19 8.05 -2.39 -0.02 3.17 15 Total: -1.00 -57.36 230.08 4.44 -52.92 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.13 Total: 4.62 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 2.36 Total: -37.35 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.24 Total: -52.12 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -11.93 SS G_CDS: -1.31 Total: -13.24 kcal Total: -57.36 4.44 -52.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.629 kcal (2) G-P(sol) polarization free energy of solvation -57.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds