Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46728 * 90.00208 * 8 6 4 10 10 H 1.48498 * 109.46997 * 209.99903 * 8 6 4 11 11 H 1.48494 * 109.47182 * 330.00149 * 8 6 4 12 12 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 13 13 H 1.08998 * 109.60494 * 300.32024 * 12 2 1 14 14 C 1.52942 * 109.60083 * 179.97438 * 12 2 1 15 15 C 1.53711 * 112.49379 * 209.96984 * 14 12 2 16 16 S 1.83397 * 104.96507 * 2.82988 * 15 14 12 17 17 C 1.55153 * 109.60485 * 60.46880 * 12 2 1 18 18 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 20 20 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 21 21 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 22 22 H 1.09000 * 108.89136 * 330.76789 * 14 12 2 23 23 H 1.09009 * 108.88629 * 89.32134 * 14 12 2 24 24 H 1.08997 * 110.33625 * 121.70292 * 15 14 12 25 25 H 1.09000 * 110.34081 * 243.85231 * 15 14 12 26 26 H 1.09003 * 111.12527 * 279.27716 * 17 12 2 27 27 H 1.09001 * 111.13472 * 43.45196 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.6306 -0.5439 4.4118 10 1 1.3446 -0.9489 5.1123 11 1 2.4881 -2.5652 3.7122 12 6 2.0399 -0.7214 -1.2492 13 1 1.6731 -1.7477 -1.2542 14 6 3.5693 -0.7226 -1.2526 15 6 4.1542 -0.7242 -2.6741 16 16 2.6980 -0.6364 -3.7855 17 6 1.5342 0.0144 -2.5181 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 0.7082 1.1609 3.4843 22 1 3.9242 0.1634 -0.7261 23 1 3.9227 -1.6098 -0.7270 24 1 4.7958 0.1447 -2.8207 25 1 4.7142 -1.6422 -2.8524 26 1 0.5059 -0.2634 -2.7497 27 1 1.6329 1.0947 -2.4116 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624415.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -25.044515 kcal Electronic energy + Delta-G solvation = -9842.060078 eV Core-core repulsion = 8111.051926 eV Total energy + Delta-G solvation = -1731.008152 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.85263 -33.02678 -30.61440 -27.92980 -25.55512 -23.92815 -20.89332 -18.91061 -16.50110 -16.01792 -14.82881 -14.43277 -13.57797 -13.29004 -12.74947 -12.24812 -11.71371 -11.52117 -11.26852 -11.06845 -10.85832 -10.58281 -10.21557 -10.16658 -9.82647 -9.68198 -8.97759 -8.80166 -8.36877 -7.33779 -6.01917 -4.08742 2.35720 2.79730 3.27618 3.35028 3.37821 4.40434 5.23098 5.29612 5.33389 5.55169 5.64976 5.81823 6.02250 6.25285 6.30461 6.69852 6.73312 6.83764 6.95926 7.14863 7.30191 7.68775 7.92241 8.10189 8.39801 8.94291 9.56487 11.03803 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.065049 B = 0.011501 C = 0.010222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.339537 B = 2434.023568 C = 2738.626524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 H 0.028 0.972 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.078 4.078 13 H 0.070 0.930 14 C -0.113 4.113 15 C -0.061 4.061 16 S -0.348 6.348 17 C -0.047 4.047 18 H 0.025 0.975 19 H 0.082 0.918 20 H 0.009 0.991 21 H 0.260 0.740 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 -1.621 -6.308 7.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.034 3.966 3 H 0.046 0.954 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.099 4.099 13 H 0.088 0.912 14 C -0.152 4.152 15 C -0.209 4.209 16 S -0.122 6.122 17 C -0.195 4.195 18 H 0.045 0.955 19 H 0.101 0.899 20 H 0.028 0.972 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.713 -1.788 -7.369 8.054 hybrid contribution 0.464 -0.170 2.055 2.114 sum 3.177 -1.958 -5.314 6.493 Atomic orbital electron populations 1.21855 0.98643 0.99041 1.00178 1.18741 0.92586 0.95427 0.89802 0.95432 1.21172 1.31068 1.12317 0.90447 0.92611 1.24966 0.95072 0.94990 0.98971 1.69885 1.36705 1.23000 1.23319 0.86637 0.78595 0.80109 0.82928 1.20738 1.21268 1.19953 1.22137 0.93091 0.99946 0.94680 0.91158 1.21934 0.96150 1.04037 0.93069 1.23976 0.96447 1.04342 0.96170 1.87426 1.12830 1.87266 1.24641 1.24560 0.98937 1.02429 0.93555 0.95542 0.89913 0.97238 0.93027 0.90646 0.90834 0.90084 0.89391 0.88441 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.72 37.16 0.32 -2.92 15 2 C 0.05 1.29 1.70 -91.77 -0.16 1.13 15 3 H 0.03 0.71 8.10 -51.93 -0.42 0.29 15 4 C -0.51 -13.40 7.99 -34.44 -0.28 -13.67 15 5 H 0.06 1.44 7.15 -52.49 -0.38 1.06 15 6 C 0.06 1.65 5.30 -17.81 -0.09 1.55 15 7 N -0.89 -24.94 11.32 55.43 0.63 -24.31 15 8 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 15 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 12 C -0.08 -1.55 2.09 -89.51 -0.19 -1.74 15 13 H 0.07 1.45 8.14 -51.93 -0.42 1.02 15 14 C -0.11 -2.05 5.06 -26.39 -0.13 -2.18 15 15 C -0.06 -0.95 7.38 37.53 0.28 -0.67 15 16 S -0.35 -5.97 23.23 -107.50 -2.50 -8.46 15 17 C -0.05 -0.84 5.83 38.30 0.22 -0.61 15 18 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.08 2.15 6.07 -51.93 -0.32 1.84 15 20 H 0.01 0.18 6.98 -51.93 -0.36 -0.18 15 21 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.07 1.44 7.78 -51.93 -0.40 1.03 15 23 H 0.07 1.32 7.76 -51.92 -0.40 0.92 15 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 26 H 0.10 1.65 7.74 -51.93 -0.40 1.25 15 27 H 0.08 1.50 8.11 -51.93 -0.42 1.08 15 LS Contribution 230.04 15.07 3.47 3.47 Total: -1.00 -27.02 230.04 -7.37 -34.39 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.93 Total: -1.79 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.02 Total: -19.12 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.63 Total: -24.31 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -2.50 Total: -8.46 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.02 -7.37 -34.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624415.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.349 kcal (2) G-P(sol) polarization free energy of solvation -27.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds