Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46514 * 2 1 4 4 C 1.50696 * 109.47153 * 240.00119 * 2 1 3 5 5 H 1.08005 * 119.99505 * 240.00170 * 4 2 1 6 6 C 1.37871 * 120.00433 * 59.99619 * 4 2 1 7 7 N 1.31513 * 120.00060 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00295 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46949 * 60.00281 * 8 6 4 10 10 H 1.48493 * 109.47274 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47121 * 300.00507 * 8 6 4 12 12 C 1.53003 * 109.47086 * 119.99538 * 2 1 3 13 13 H 1.09006 * 108.84398 * 57.12484 * 12 2 1 14 14 C 1.52930 * 108.77426 * 175.63619 * 12 2 1 15 15 C 1.55153 * 108.96125 * 150.82150 * 14 12 2 16 16 S 1.84215 * 100.95988 * 318.62164 * 15 14 12 17 17 C 1.53706 * 108.88711 * 298.55156 * 12 2 1 18 18 H 1.09000 * 109.47465 * 299.99726 * 1 2 3 19 19 H 1.09002 * 109.46976 * 60.00330 * 1 2 3 20 20 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 21 21 H 0.97000 * 120.00384 * 179.97438 * 7 6 4 22 22 H 1.08996 * 109.60597 * 270.74972 * 14 12 2 23 23 H 1.09000 * 109.60408 * 30.89135 * 14 12 2 24 24 H 1.08992 * 111.13707 * 76.47228 * 15 14 12 25 25 H 1.09001 * 111.13328 * 200.60968 * 15 14 12 26 26 H 1.09002 * 110.34362 * 355.39395 * 17 12 2 27 27 H 1.09000 * 110.34191 * 117.54417 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8269 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0400 -0.7212 1.2493 13 1 1.6294 -1.7308 1.2653 14 6 3.5653 -0.8080 1.1794 15 6 4.1361 -0.8228 2.6220 16 16 3.0726 0.4443 3.4325 17 6 1.5506 0.0348 2.4949 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 0.7095 1.1617 -3.4845 22 1 3.8562 -1.7219 0.6616 23 1 3.9563 0.0548 0.6402 24 1 4.0043 -1.7999 3.0868 25 1 5.1841 -0.5233 2.6331 26 1 1.0280 0.9461 2.2040 27 1 0.8974 -0.6015 3.0920 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -23.263372 kcal Electronic energy + Delta-G solvation = -9870.290866 eV Core-core repulsion = 8139.359949 eV Total energy + Delta-G solvation = -1730.930916 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.92374 -32.96107 -30.58572 -27.91947 -25.55538 -23.88665 -20.85155 -18.88109 -16.48051 -16.13033 -14.84796 -14.26259 -13.67030 -13.24252 -12.43057 -12.31586 -11.95557 -11.54456 -11.16774 -11.02878 -10.72054 -10.65507 -10.24425 -10.15574 -9.84112 -9.49301 -9.01532 -8.79487 -8.34783 -7.28571 -6.00006 -4.06843 2.38263 2.82851 3.29774 3.35202 3.36955 4.41489 5.23729 5.32267 5.36696 5.60211 5.65440 5.81583 5.97854 6.23329 6.35072 6.71225 6.74056 6.89634 6.93963 7.18558 7.31763 7.70212 7.95415 8.11469 8.41431 8.95859 9.58142 11.05883 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.061780 B = 0.011926 C = 0.010616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.115724 B = 2347.345076 C = 2636.961050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 H 0.030 0.970 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 C -0.088 4.088 13 H 0.063 0.937 14 C -0.103 4.103 15 C -0.064 4.064 16 S -0.341 6.341 17 C -0.050 4.050 18 H 0.009 0.991 19 H 0.082 0.918 20 H 0.024 0.976 21 H 0.260 0.740 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 -2.915 6.600 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.034 3.966 3 H 0.048 0.952 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.108 4.108 13 H 0.082 0.918 14 C -0.142 4.142 15 C -0.212 4.212 16 S -0.116 6.116 17 C -0.198 4.198 18 H 0.028 0.972 19 H 0.101 0.899 20 H 0.043 0.957 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.884 -1.969 7.330 8.119 hybrid contribution 0.004 -1.308 -1.738 2.175 sum 2.888 -3.277 5.592 7.096 Atomic orbital electron populations 1.21892 0.98820 0.98937 1.00165 1.18797 0.92411 0.95640 0.89773 0.95187 1.21148 1.31146 1.12310 0.90508 0.92662 1.24959 0.95097 0.94977 0.98946 1.69874 1.36707 1.22878 1.23398 0.86707 0.79203 0.79771 0.82597 1.20372 1.21333 1.20305 1.21726 0.94309 0.99478 0.95238 0.91844 1.22335 0.95150 1.03849 0.92877 1.24431 1.00307 0.98073 0.98418 1.87481 1.13713 1.52365 1.57995 1.24183 0.94739 1.03705 0.97130 0.97237 0.89891 0.95661 0.92977 0.90665 0.90026 0.90128 0.88627 0.88348 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.72 37.16 0.32 -2.97 15 2 C 0.05 1.27 1.51 -91.77 -0.14 1.13 15 3 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 4 C -0.51 -13.48 7.89 -34.44 -0.27 -13.75 15 5 H 0.06 1.41 6.87 -52.48 -0.36 1.05 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 15 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 15 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 12 C -0.09 -1.74 2.27 -90.29 -0.20 -1.94 15 13 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 14 C -0.10 -1.88 4.83 -25.63 -0.12 -2.00 15 15 C -0.06 -0.99 7.53 38.30 0.29 -0.70 15 16 S -0.34 -5.99 23.24 -107.50 -2.50 -8.49 15 17 C -0.05 -0.90 6.31 37.52 0.24 -0.66 15 18 H 0.01 0.18 6.60 -51.93 -0.34 -0.16 15 19 H 0.08 2.18 6.07 -51.93 -0.32 1.86 15 20 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 22 H 0.07 1.33 7.58 -51.93 -0.39 0.94 15 23 H 0.08 1.64 7.80 -51.93 -0.40 1.23 15 24 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 25 H 0.10 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.10 1.85 6.55 -51.93 -0.34 1.51 15 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 LS Contribution 228.40 15.07 3.44 3.44 Total: -1.00 -27.32 228.40 -7.26 -34.59 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.83 Total: -1.57 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 0.02 Total: -19.33 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.53 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -2.50 Total: -8.49 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.32 -7.26 -34.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.324 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds