Wall clock time and date at job start Mon Mar 30 2020 02:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46778 * 2 1 4 4 C 1.50701 * 109.47084 * 119.99790 * 2 1 3 5 5 H 1.08000 * 119.99995 * 114.36797 * 4 2 1 6 6 C 1.37874 * 119.99732 * 294.36279 * 4 2 1 7 7 N 1.31523 * 119.99771 * 156.35685 * 6 4 2 8 8 Si 1.86800 * 120.00363 * 336.63439 * 6 4 2 9 9 H 1.48500 * 109.47059 * 179.72148 * 8 6 4 10 10 H 1.48491 * 109.47058 * 299.72275 * 8 6 4 11 11 H 1.48499 * 109.46771 * 59.72723 * 8 6 4 12 12 C 1.52995 * 109.47024 * 239.99963 * 2 1 3 13 13 H 1.08999 * 109.60378 * 298.87936 * 12 2 1 14 14 C 1.53855 * 109.61249 * 59.04183 * 12 2 1 15 15 C 1.55140 * 106.89963 * 167.17345 * 14 12 2 16 16 S 1.83460 * 102.20329 * 317.88619 * 15 14 12 17 17 C 1.54274 * 109.61078 * 178.54655 * 12 2 1 18 18 H 1.08996 * 109.47169 * 292.85041 * 1 2 3 19 19 H 1.08995 * 109.47008 * 52.84912 * 1 2 3 20 20 H 1.08997 * 109.46699 * 172.85083 * 1 2 3 21 21 H 0.97003 * 119.99350 * 355.21462 * 7 6 4 22 22 H 1.09001 * 109.97979 * 286.53517 * 14 12 2 23 23 H 1.09001 * 109.97220 * 47.81924 * 14 12 2 24 24 H 1.08999 * 110.85431 * 199.70648 * 15 14 12 25 25 H 1.09004 * 110.85588 * 76.06668 * 15 14 12 26 26 H 1.09005 * 110.39679 * 330.92094 * 17 12 2 27 27 H 1.09004 * 110.40216 * 93.21520 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5762 -1.6385 1.1341 6 6 1.7978 -0.1754 2.4794 7 7 1.7976 -0.9544 3.5390 8 14 1.4724 1.6546 2.6655 9 1 1.2452 1.9738 4.0979 10 1 2.6442 2.4189 2.1679 11 1 0.2688 2.0259 1.8788 12 6 2.0400 -0.7212 -1.2492 13 1 1.6944 -1.7549 -1.2414 14 6 1.5092 -0.0126 -2.5075 15 6 2.3102 -0.5729 -3.7123 16 16 4.0193 -0.6318 -3.0480 17 6 3.5823 -0.6913 -1.2710 18 1 -0.3633 0.3991 0.9470 19 1 -0.3633 0.6206 -0.8191 20 1 -0.3632 -1.0197 -0.1279 21 1 1.8933 -1.9141 3.4354 22 1 0.4478 -0.2252 -2.6348 23 1 1.6666 1.0627 -2.4235 24 1 2.2488 0.1015 -4.5664 25 1 1.9627 -1.5711 -3.9788 26 1 3.9523 0.1969 -0.7588 27 1 3.9865 -1.5918 -0.8085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624426.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:32 Heat of formation + Delta-G solvation = -26.459859 kcal Electronic energy + Delta-G solvation = -9881.350686 eV Core-core repulsion = 8150.281159 eV Total energy + Delta-G solvation = -1731.069526 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.10281 -33.07927 -30.81003 -28.71157 -24.79117 -23.85632 -21.20443 -18.92491 -17.54591 -16.09653 -14.82279 -14.28550 -13.73527 -13.33328 -12.86274 -12.48807 -11.92995 -11.81832 -11.52195 -11.40497 -10.64290 -10.45445 -10.38453 -10.30087 -9.87477 -9.66759 -9.26021 -8.91794 -8.18716 -7.35739 -6.47336 -4.06844 2.26603 2.82981 3.38992 3.43346 3.60639 4.49866 5.05283 5.10932 5.21688 5.42097 5.56589 5.71634 5.86703 6.09789 6.12830 6.34121 6.37873 6.52329 6.62680 6.81231 6.84460 7.20933 7.46298 8.12858 8.36508 8.88256 9.58684 10.89196 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.057648 B = 0.012502 C = 0.011818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.593402 B = 2239.134004 C = 2368.760847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 H 0.022 0.978 4 C -0.606 4.606 5 H 0.057 0.943 6 C 0.037 3.963 7 N -0.900 5.900 8 Si 1.036 2.964 9 H -0.287 1.287 10 H -0.284 1.284 11 H -0.278 1.278 12 C -0.076 4.076 13 H 0.069 0.931 14 C -0.126 4.126 15 C -0.065 4.065 16 S -0.346 6.346 17 C -0.032 4.032 18 H 0.049 0.951 19 H 0.022 0.978 20 H 0.040 0.960 21 H 0.269 0.731 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 2.411 -10.560 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 H 0.040 0.960 4 C -0.643 4.643 5 H 0.075 0.925 6 C -0.169 4.169 7 N -0.533 5.533 8 Si 0.864 3.136 9 H -0.212 1.212 10 H -0.210 1.210 11 H -0.204 1.204 12 C -0.096 4.096 13 H 0.088 0.912 14 C -0.165 4.165 15 C -0.213 4.213 16 S -0.120 6.120 17 C -0.180 4.180 18 H 0.068 0.932 19 H 0.042 0.958 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.272 3.580 -9.985 10.611 hybrid contribution -0.775 -1.317 -0.542 1.621 sum -1.047 2.263 -10.527 10.818 Atomic orbital electron populations 1.22192 0.98992 0.99539 0.99420 1.19011 0.91989 0.95519 0.92662 0.96002 1.21896 1.40710 1.10600 0.91120 0.92526 1.25692 0.93288 1.05619 0.92265 1.70854 1.43933 1.06269 1.32199 0.84143 0.77206 0.76262 0.75977 1.21241 1.20996 1.20389 1.21913 0.91796 1.00487 0.95370 0.91211 1.22745 0.99999 1.01156 0.92570 1.24179 0.92673 1.03888 1.00559 1.87276 1.15556 1.98215 1.11001 1.24014 0.98788 1.05965 0.89214 0.93181 0.95848 0.94037 0.92140 0.90259 0.90765 0.88878 0.89822 0.88753 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.38 37.16 0.31 -2.70 15 2 C 0.03 0.64 1.34 -91.77 -0.12 0.51 15 3 H 0.02 0.50 6.69 -51.93 -0.35 0.15 15 4 C -0.61 -16.20 8.16 -34.44 -0.28 -16.49 15 5 H 0.06 1.63 7.86 -52.49 -0.41 1.22 15 6 C 0.04 1.05 5.19 -17.82 -0.09 0.96 15 7 N -0.90 -27.06 13.70 55.43 0.76 -26.30 15 8 Si 1.04 24.69 26.45 -169.99 -4.50 20.20 15 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 11 H -0.28 -6.15 6.17 56.52 0.35 -5.81 15 12 C -0.08 -1.45 2.13 -89.51 -0.19 -1.64 15 13 H 0.07 1.39 8.14 -51.93 -0.42 0.96 15 14 C -0.13 -1.98 4.97 -25.15 -0.13 -2.10 15 15 C -0.06 -0.93 7.38 38.29 0.28 -0.64 15 16 S -0.35 -5.97 23.26 -107.50 -2.50 -8.47 15 17 C -0.03 -0.62 6.06 37.82 0.23 -0.39 15 18 H 0.05 1.12 5.51 -51.93 -0.29 0.83 15 19 H 0.02 0.41 7.16 -51.93 -0.37 0.04 15 20 H 0.04 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.27 8.05 8.73 -40.82 -0.36 7.70 15 22 H 0.08 1.14 7.42 -51.93 -0.39 0.75 15 23 H 0.07 1.17 8.11 -51.93 -0.42 0.75 15 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.08 1.11 8.14 -51.93 -0.42 0.68 15 26 H 0.09 1.89 7.88 -51.93 -0.41 1.48 15 27 H 0.09 1.76 8.14 -51.93 -0.42 1.34 15 LS Contribution 227.45 15.07 3.43 3.43 Total: -1.00 -28.25 227.45 -6.75 -35.00 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.95 Total: -1.37 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 0.01 Total: -22.49 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.76 Total: -26.30 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.50 Total: 20.20 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -2.50 Total: -8.47 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.25 -6.75 -35.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624426.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.544 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds