Wall clock time and date at job start Mon Mar 30 2020 02:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46778 * 2 1 4 4 C 1.50701 * 109.47084 * 119.99790 * 2 1 3 5 5 H 1.08000 * 119.99995 * 114.36797 * 4 2 1 6 6 C 1.37874 * 119.99732 * 294.36279 * 4 2 1 7 7 N 1.31523 * 119.99771 * 156.35685 * 6 4 2 8 8 Si 1.86800 * 120.00363 * 336.63439 * 6 4 2 9 9 H 1.48500 * 109.47059 * 179.72148 * 8 6 4 10 10 H 1.48491 * 109.47058 * 299.72275 * 8 6 4 11 11 H 1.48499 * 109.46771 * 59.72723 * 8 6 4 12 12 C 1.52995 * 109.47024 * 239.99963 * 2 1 3 13 13 H 1.08999 * 109.60378 * 298.87936 * 12 2 1 14 14 C 1.53855 * 109.61249 * 59.04183 * 12 2 1 15 15 C 1.55140 * 106.89963 * 167.17345 * 14 12 2 16 16 S 1.83460 * 102.20329 * 317.88619 * 15 14 12 17 17 C 1.54274 * 109.61078 * 178.54655 * 12 2 1 18 18 H 1.08996 * 109.47169 * 292.85041 * 1 2 3 19 19 H 1.08995 * 109.47008 * 52.84912 * 1 2 3 20 20 H 1.08997 * 109.46699 * 172.85083 * 1 2 3 21 21 H 0.97003 * 119.99350 * 355.21462 * 7 6 4 22 22 H 1.09001 * 109.97979 * 286.53517 * 14 12 2 23 23 H 1.09001 * 109.97220 * 47.81924 * 14 12 2 24 24 H 1.08999 * 110.85431 * 199.70648 * 15 14 12 25 25 H 1.09004 * 110.85588 * 76.06668 * 15 14 12 26 26 H 1.09005 * 110.39679 * 330.92094 * 17 12 2 27 27 H 1.09004 * 110.40216 * 93.21520 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5762 -1.6385 1.1341 6 6 1.7978 -0.1754 2.4794 7 7 1.7976 -0.9544 3.5390 8 14 1.4724 1.6546 2.6655 9 1 1.2452 1.9738 4.0979 10 1 2.6442 2.4189 2.1679 11 1 0.2688 2.0259 1.8788 12 6 2.0400 -0.7212 -1.2492 13 1 1.6944 -1.7549 -1.2414 14 6 1.5092 -0.0126 -2.5075 15 6 2.3102 -0.5729 -3.7123 16 16 4.0193 -0.6318 -3.0480 17 6 3.5823 -0.6913 -1.2710 18 1 -0.3633 0.3991 0.9470 19 1 -0.3633 0.6206 -0.8191 20 1 -0.3632 -1.0197 -0.1279 21 1 1.8933 -1.9141 3.4354 22 1 0.4478 -0.2252 -2.6348 23 1 1.6666 1.0627 -2.4235 24 1 2.2488 0.1015 -4.5664 25 1 1.9627 -1.5711 -3.9788 26 1 3.9523 0.1969 -0.7588 27 1 3.9865 -1.5918 -0.8085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624426.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:32 Heat of formation + Delta-G solvation = -43.114851 kcal Electronic energy + Delta-G solvation = -9882.072900 eV Core-core repulsion = 8150.281159 eV Total energy + Delta-G solvation = -1731.791741 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.68061 -34.98677 -32.54725 -30.19135 -26.72090 -25.31358 -22.80871 -20.57615 -19.60590 -17.49793 -16.22105 -16.01272 -15.39836 -14.97096 -14.45974 -14.22940 -13.52074 -13.35054 -13.18905 -12.78717 -12.38168 -12.09727 -11.97840 -11.85967 -11.60670 -11.36577 -10.95364 -10.71594 -10.32086 -8.72569 -8.69041 -6.28291 0.94153 1.46645 1.48752 1.54568 1.73258 2.52680 3.06008 3.77152 3.80414 4.04070 4.21870 4.38272 4.56851 4.63425 4.75167 4.82408 4.88924 4.96252 5.06635 5.17550 5.27557 5.47217 5.74642 6.06740 6.17227 6.64247 7.45289 8.65904 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.057648 B = 0.012502 C = 0.011818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.593402 B = 2239.134004 C = 2368.760847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.025 3.975 3 H 0.027 0.973 4 C -0.601 4.601 5 H 0.018 0.982 6 C -0.016 4.016 7 N -0.938 5.938 8 Si 1.074 2.926 9 H -0.294 1.294 10 H -0.268 1.268 11 H -0.244 1.244 12 C -0.074 4.074 13 H 0.056 0.944 14 C -0.119 4.119 15 C -0.052 4.052 16 S -0.359 6.359 17 C -0.034 4.034 18 H 0.033 0.967 19 H 0.063 0.937 20 H 0.038 0.962 21 H 0.253 0.747 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 4.096 -12.986 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.004 3.996 3 H 0.045 0.955 4 C -0.639 4.639 5 H 0.037 0.963 6 C -0.214 4.214 7 N -0.573 5.573 8 Si 0.896 3.104 9 H -0.221 1.221 10 H -0.193 1.193 11 H -0.168 1.168 12 C -0.094 4.094 13 H 0.075 0.925 14 C -0.157 4.157 15 C -0.199 4.199 16 S -0.133 6.133 17 C -0.182 4.182 18 H 0.052 0.948 19 H 0.082 0.918 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.120 0.880 23 H 0.099 0.901 24 H 0.142 0.858 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.449 5.256 -12.448 13.589 hybrid contribution -0.359 -1.938 0.153 1.977 sum -1.808 3.318 -12.295 12.862 Atomic orbital electron populations 1.22090 0.97276 1.00234 1.00166 1.19011 0.93262 0.95313 0.91982 0.95546 1.22138 1.39229 1.09179 0.93314 0.96318 1.27055 0.92994 1.09162 0.92235 1.70982 1.47464 1.05507 1.33382 0.83666 0.79031 0.71566 0.76115 1.22084 1.19313 1.16838 1.21836 0.91574 0.99879 0.96083 0.92498 1.22671 1.01256 1.01003 0.90806 1.24334 0.89346 1.05577 1.00644 1.87327 1.18743 1.98230 1.09000 1.23821 0.99144 1.04249 0.91031 0.94826 0.91788 0.94310 0.93871 0.87955 0.90123 0.85780 0.88354 0.90183 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.38 71.98 0.60 -4.85 15 2 C 0.02 1.06 1.34 -11.54 -0.02 1.05 15 3 H 0.03 1.14 6.69 -2.39 -0.02 1.12 15 4 C -0.60 -32.76 8.16 25.60 0.21 -32.55 15 5 H 0.02 1.12 7.86 -2.91 -0.02 1.10 15 6 C -0.02 -0.90 5.19 84.65 0.44 -0.46 15 7 N -0.94 -58.37 13.70 21.45 0.29 -58.08 15 8 Si 1.07 49.00 26.45 68.60 1.81 50.81 15 9 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 11 H -0.24 -9.80 6.17 99.48 0.61 -9.18 15 12 C -0.07 -2.70 2.13 -10.08 -0.02 -2.73 15 13 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 14 C -0.12 -3.22 4.97 31.62 0.16 -3.06 15 15 C -0.05 -1.25 7.38 72.72 0.54 -0.71 15 16 S -0.36 -11.64 23.26 -56.49 -1.31 -12.96 15 17 C -0.03 -1.32 6.06 72.41 0.44 -0.88 15 18 H 0.03 1.40 5.51 -2.39 -0.01 1.39 15 19 H 0.06 1.98 7.16 -2.39 -0.02 1.96 15 20 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.25 15.96 8.73 -92.71 -0.81 15.15 15 22 H 0.10 2.36 7.42 -2.39 -0.02 2.35 15 23 H 0.08 2.14 8.11 -2.39 -0.02 2.12 15 24 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.10 2.15 8.14 -2.38 -0.02 2.13 15 26 H 0.08 3.23 7.88 -2.38 -0.02 3.21 15 27 H 0.07 2.83 8.14 -2.39 -0.02 2.81 15 Total: -1.00 -62.20 227.45 4.14 -58.07 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.00 Total: 6.35 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 2.35 Total: -44.19 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.29 Total: -58.08 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.81 Total: 50.81 kcal Atomic # 16 Polarization: -11.64 SS G_CDS: -1.31 Total: -12.96 kcal Total: -62.20 4.14 -58.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624426.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.952 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds